Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   MM221_RS17290 Genome accession   NZ_CP093299
Coordinates   3663799..3666150 (+) Length   783 a.a.
NCBI ID   WP_255235483.1    Uniprot ID   -
Organism   Salipaludibacillus sp. LMS25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3658799..3671150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM221_RS17265 (MM221_17075) - 3659574..3659891 (+) 318 WP_255235479.1 post-transcriptional regulator -
  MM221_RS17270 (MM221_17080) secD 3660039..3661355 (+) 1317 WP_255235480.1 protein translocase subunit SecD -
  MM221_RS17275 (MM221_17085) secF 3661345..3662286 (+) 942 WP_255235481.1 protein translocase subunit SecF -
  MM221_RS17280 (MM221_17090) - 3662505..3663401 (+) 897 WP_255238250.1 cation diffusion facilitator family transporter -
  MM221_RS17285 (MM221_17095) - 3663407..3663733 (+) 327 WP_255235482.1 lipopolysaccharide assembly LapA domain-containing protein -
  MM221_RS17290 (MM221_17100) recJ 3663799..3666150 (+) 2352 WP_255235483.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MM221_RS17295 (MM221_17105) - 3666226..3666738 (+) 513 WP_255235484.1 adenine phosphoribosyltransferase -
  MM221_RS17300 (MM221_17110) - 3667398..3669581 (+) 2184 WP_255235485.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  MM221_RS17305 (MM221_17115) dtd 3669608..3670054 (+) 447 WP_255235486.1 D-aminoacyl-tRNA deacylase -
  MM221_RS17310 (MM221_17120) - 3670116..3670292 (+) 177 WP_255235487.1 hypothetical protein -

Sequence

Protein


Download         Length: 783 a.a.        Molecular weight: 88179.08 Da        Isoelectric Point: 5.2654

>NTDB_id=663254 MM221_RS17290 WP_255235483.1 3663799..3666150(+) (recJ) [Salipaludibacillus sp. LMS25]
MLHSKAEWKITRIDEEKVQRIAEQTGLSHIAARFLVQRGMTTKEAIDTFLHMNDEALLDPYRLKDMDKAVIRIKKAIDHG
ERILIFGDYDADGVTSTSLIYLTLRKMGAEVGFYIPNRFTEGYGPNENAFRQAADENVSLIVTVDTGIAAINEAKVAKEL
GVDLIITDHHEPPPELPDAFAVINPKQSTCPYENKHLAGVGVAFKVAHALLARIPEEFYDLVAIGTIADLVELQGENRYL
ATKGIQSLTHSQRPGLKALLERAGSTQQEINEEQVGFLIGPRLNAAGRLDAADPAVELLITEDLVEADELAQMIDDLNKE
RQKIVKDITSEAEAMVEDNGIPPVIVVGQEGWNPGVIGIVASRLVEKFYRPTIVLSYDSEKGQAKGSARSIEGFDMFASL
SQCREWLPHFGGHTMAAGLTMDLSHVDMLREKLSDMALATLSEKEWQKSLQVDLPIALNEVSLQAISDLQQMAPFGMGNP
APTFLIESVHLHTMKKIGANEDHLKLTVADSEQYQLDCIGFRMGTVYEQISPLSTLSAVGKLSVNEWNGQSKPQFIIDDI
KVADWQLFDFRGDKRLWQNKTLMSLEECTVIVFRSNPGRLPELPVSWQVVQLNKVSEHEAREKVSIAKNLLLMDLPDSFA
QFRHVMLHARALENLYVAFLHDRDYFFETIPTRDHFKWLYALLLKRKTFDLHNKGKELAKYKGWTEEAVHFMCQVFFELE
FVKIDKGVVALTDQPVKKDLIESPTYQKRIEENKIEKDLYYSSLSSLKEVMDMARKGKQLTSV

Nucleotide


Download         Length: 2352 bp        

>NTDB_id=663254 MM221_RS17290 WP_255235483.1 3663799..3666150(+) (recJ) [Salipaludibacillus sp. LMS25]
ATGCTTCATTCAAAAGCAGAATGGAAGATTACAAGAATTGATGAAGAAAAAGTCCAACGAATTGCAGAACAAACTGGACT
TTCACATATTGCAGCTCGTTTTCTCGTTCAGCGAGGTATGACGACGAAAGAAGCGATTGATACGTTTTTACATATGAATG
ATGAGGCGCTACTTGATCCATATAGGTTGAAAGATATGGACAAAGCTGTCATTCGTATAAAAAAGGCGATTGATCATGGA
GAGAGAATTTTGATTTTTGGAGATTATGATGCAGATGGTGTTACAAGTACATCTCTCATCTATTTGACATTAAGAAAAAT
GGGGGCTGAGGTCGGTTTTTATATACCTAATAGATTTACTGAAGGATATGGGCCAAATGAGAATGCCTTCCGCCAGGCAG
CAGATGAAAACGTTTCATTGATCGTGACAGTAGATACAGGCATTGCGGCAATTAATGAAGCGAAGGTTGCAAAGGAGTTA
GGGGTAGATTTAATCATTACTGACCACCATGAACCACCGCCTGAATTGCCGGATGCTTTTGCTGTCATTAACCCGAAGCA
GTCTACGTGTCCCTATGAGAATAAACATTTAGCAGGCGTTGGGGTAGCGTTTAAAGTAGCCCATGCATTATTAGCAAGGA
TACCTGAAGAATTTTATGATTTAGTAGCTATTGGGACCATTGCTGATCTTGTAGAGTTACAAGGAGAAAATCGTTATTTG
GCTACGAAAGGAATCCAAAGTTTGACGCACAGTCAGCGTCCCGGCTTAAAAGCGTTATTAGAAAGGGCAGGTTCAACACA
ACAAGAAATAAATGAAGAACAAGTCGGTTTTTTAATTGGTCCCAGGCTCAATGCAGCTGGGCGTCTAGATGCTGCTGATC
CTGCTGTGGAGCTGTTAATTACTGAGGATTTAGTAGAAGCAGATGAGCTGGCACAAATGATTGATGACTTGAATAAAGAG
CGTCAAAAAATCGTAAAAGACATCACGAGTGAGGCGGAAGCAATGGTTGAAGATAATGGAATTCCGCCAGTCATCGTCGT
GGGACAGGAAGGTTGGAATCCTGGTGTTATAGGAATTGTTGCCAGCCGTCTCGTAGAAAAATTTTACCGGCCAACAATCG
TGTTAAGTTACGATAGCGAGAAGGGGCAAGCGAAGGGCTCTGCAAGAAGCATCGAAGGATTTGATATGTTTGCATCGCTG
TCTCAATGTCGAGAATGGCTTCCGCATTTTGGAGGGCACACGATGGCAGCGGGACTTACAATGGATTTAAGTCATGTGGA
TATGTTAAGAGAGAAGTTAAGCGACATGGCATTAGCAACACTGTCGGAGAAAGAATGGCAAAAATCCCTCCAGGTGGACT
TACCAATTGCCTTAAATGAAGTATCGTTACAAGCTATAAGTGATTTACAGCAAATGGCTCCTTTTGGAATGGGAAATCCA
GCCCCAACCTTTCTGATCGAAAGTGTTCACCTTCATACAATGAAGAAAATCGGGGCTAATGAAGATCACCTTAAGCTGAC
AGTAGCTGACAGTGAGCAGTATCAATTAGATTGTATCGGTTTCCGTATGGGGACAGTTTATGAGCAAATCTCACCATTAT
CCACATTGTCTGCTGTTGGAAAATTATCCGTTAATGAGTGGAATGGACAAAGTAAACCTCAATTTATTATCGATGATATA
AAAGTGGCTGATTGGCAATTATTTGATTTTAGAGGAGATAAACGACTGTGGCAAAACAAGACACTTATGTCTCTGGAGGA
ATGTACAGTCATTGTCTTCAGATCTAATCCAGGTCGTTTACCTGAGCTACCTGTTTCTTGGCAAGTGGTTCAGCTGAATA
AAGTGAGTGAACATGAGGCAAGAGAGAAGGTGTCCATAGCGAAAAACTTATTATTAATGGACTTGCCTGATTCATTCGCC
CAATTCAGACACGTCATGCTTCATGCACGAGCATTAGAAAATTTATACGTTGCTTTCCTACATGATAGAGACTATTTTTT
TGAGACCATTCCCACTAGGGACCATTTTAAATGGTTATATGCTTTGCTTTTAAAAAGAAAAACATTTGATCTTCATAATA
AAGGAAAAGAACTTGCTAAATATAAAGGATGGACAGAAGAAGCTGTTCATTTCATGTGTCAGGTGTTTTTTGAGTTGGAG
TTTGTTAAAATAGATAAGGGTGTGGTGGCACTTACGGACCAGCCTGTAAAAAAAGATTTGATTGAATCACCGACTTACCA
GAAACGAATTGAAGAAAATAAAATAGAAAAAGACTTATATTATTCCTCGTTAAGCTCGTTAAAGGAAGTCATGGATATGG
CAAGGAAAGGCAAACAATTAACATCCGTCTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-770)

RecJ OB domain (RecJ_OB)

(452-559)

DHHA1 domain (DHHA1)

(315-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

49.935

98.978

0.494