Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG279_RS34415 Genome accession   NZ_CP108565
Coordinates   7716638..7717672 (-) Length   344 a.a.
NCBI ID   WP_147961428.1    Uniprot ID   A0ABY9JNS9
Organism   Streptomyces sp. NBC_01201     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7711638..7722672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG279_RS34400 (OG279_34420) - 7714446..7715333 (-) 888 WP_147961430.1 LysR family transcriptional regulator -
  OG279_RS34405 (OG279_34425) - 7715474..7715875 (+) 402 WP_222723375.1 PPOX class F420-dependent oxidoreductase -
  OG279_RS34410 (OG279_34430) - 7715981..7716634 (+) 654 WP_147961429.1 CatB-related O-acetyltransferase -
  OG279_RS34415 (OG279_34435) cytR 7716638..7717672 (-) 1035 WP_147961428.1 LacI family DNA-binding transcriptional regulator Regulator
  OG279_RS34420 (OG279_34440) - 7717886..7718713 (+) 828 WP_327436292.1 phytanoyl-CoA dioxygenase family protein -
  OG279_RS34425 (OG279_34445) - 7718772..7721123 (-) 2352 WP_327380358.1 AbfB domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36345.31 Da        Isoelectric Point: 6.5078

>NTDB_id=663108 OG279_RS34415 WP_147961428.1 7716638..7717672(-) (cytR) [Streptomyces sp. NBC_01201]
MAARLKDVAALAGVSVRTVSNVVSNAAPVAPATRARVMAAVEELGYRPNLAARNLRQGRTGLIGVVVPEIHSPYFGALAG
LLIDAARERGWTVLLERTGGRPDLERRLLDGSEGHQVDGMIVSPWSTSPAELASLAGGLPLVVLGELAPDGSIDHVALDN
VAAARDAARHLVAGGRRRVAAIGLQSGLGHGTAELRAEGFRQGLREAGLSPVAEVEVADLHRGEGARALRELLRRSGRPD
AVFCFSDELALGALRVAAEEGVRVPEDLAVMGFDDIEDGRFATPSLTTIAPDREQIAERAVQCLTERVLGRFEALPGRRI
VVPHRVVTRESTGAAAYPDAGDHR

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=663108 OG279_RS34415 WP_147961428.1 7716638..7717672(-) (cytR) [Streptomyces sp. NBC_01201]
GTGGCAGCGAGACTCAAGGACGTCGCCGCACTCGCCGGCGTGTCCGTCCGGACCGTCTCGAACGTGGTGAGCAACGCCGC
GCCCGTCGCACCGGCGACGCGCGCCCGGGTCATGGCGGCGGTGGAGGAGCTGGGATACCGCCCCAACCTCGCCGCACGCA
ATCTCCGGCAGGGGCGCACCGGGCTCATCGGGGTGGTCGTGCCCGAGATCCACTCCCCCTACTTCGGCGCCCTGGCGGGG
CTCCTCATCGACGCTGCGCGGGAGCGCGGCTGGACGGTGCTCCTGGAGCGGACCGGGGGACGCCCGGATCTGGAACGGCG
CCTGCTGGACGGTTCGGAGGGGCACCAGGTCGACGGGATGATCGTCAGTCCGTGGTCGACGTCCCCGGCCGAACTGGCCT
CGCTCGCCGGGGGTCTGCCTCTCGTCGTCCTGGGTGAGCTGGCGCCGGACGGGTCCATCGACCATGTGGCCCTGGACAAC
GTGGCGGCGGCGCGGGACGCCGCCCGCCATCTCGTCGCGGGTGGCCGTCGGCGCGTCGCGGCGATCGGCCTGCAGTCGGG
GCTCGGCCACGGCACGGCCGAACTGCGTGCCGAGGGCTTCCGGCAGGGGCTGCGGGAGGCCGGTCTCTCTCCGGTGGCCG
AGGTGGAGGTGGCCGATCTGCACCGCGGGGAGGGTGCGCGGGCCCTTCGTGAACTGCTGCGCCGGTCCGGGCGCCCCGAC
GCGGTCTTCTGCTTCAGCGACGAACTCGCCCTCGGCGCGCTGCGCGTGGCGGCCGAGGAGGGTGTGCGGGTCCCGGAGGA
CCTGGCGGTGATGGGTTTCGACGACATCGAGGACGGCCGCTTCGCAACTCCGTCCCTCACCACGATCGCCCCGGACCGGG
AGCAGATCGCCGAACGCGCGGTGCAGTGCCTGACCGAGCGCGTCCTGGGCCGGTTCGAGGCACTGCCCGGCCGCCGGATC
GTGGTCCCGCACCGCGTGGTGACACGGGAGAGCACCGGCGCGGCGGCCTACCCGGATGCGGGAGACCACCGCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-332)

Bacterial regulatory proteins, lacI family (LacI)

(5-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.313

97.384

0.363