Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MN093_RS01205 Genome accession   NZ_CP093291
Coordinates   252421..253200 (-) Length   259 a.a.
NCBI ID   WP_241875727.1    Uniprot ID   -
Organism   Bacillus mycoides strain DSM 2048     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 220866..287910 252421..253200 within 0


Gene organization within MGE regions


Location: 220866..287910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN093_RS01060 (MN093_01060) dapA 220930..221808 (-) 879 WP_002014579.1 4-hydroxy-tetrahydrodipicolinate synthase -
  MN093_RS01065 (MN093_01065) dapG 221820..223052 (-) 1233 WP_002088068.1 aspartate kinase -
  MN093_RS01070 (MN093_01070) asd 223076..224122 (-) 1047 WP_002014577.1 aspartate-semialdehyde dehydrogenase -
  MN093_RS01075 (MN093_01075) dpaB 224272..224871 (-) 600 WP_002111357.1 dipicolinate synthase subunit B -
  MN093_RS01080 (MN093_01080) dpaA 224868..225770 (-) 903 WP_002088148.1 dipicolinic acid synthetase subunit A -
  MN093_RS01085 (MN093_01085) - 225943..226191 (-) 249 WP_002014571.1 YlmC/YmxH family sporulation protein -
  MN093_RS01090 (MN093_01090) - 226327..227568 (-) 1242 WP_002088150.1 M16 family metallopeptidase -
  MN093_RS01095 (MN093_01095) - 227655..228554 (-) 900 WP_002033683.1 polysaccharide deacetylase family protein -
  MN093_RS01100 (MN093_01100) pnp 228709..230862 (-) 2154 WP_131246425.1 polyribonucleotide nucleotidyltransferase -
  MN093_RS01105 (MN093_01105) rpsO 231024..231293 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  MN093_RS01110 (MN093_01110) ribF 231394..232365 (-) 972 WP_131246424.1 bifunctional riboflavin kinase/FAD synthetase -
  MN093_RS01115 (MN093_01115) truB 232409..233332 (-) 924 WP_002033681.1 tRNA pseudouridine(55) synthase TruB -
  MN093_RS01120 (MN093_01120) rbfA 233423..233779 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  MN093_RS01125 (MN093_01125) - 233795..234076 (-) 282 WP_002088157.1 DUF503 domain-containing protein -
  MN093_RS01130 (MN093_01130) infB 234073..236139 (-) 2067 WP_241875722.1 translation initiation factor IF-2 -
  MN093_RS01135 (MN093_01135) - 236144..236455 (-) 312 WP_002111365.1 YlxQ family RNA-binding protein -
  MN093_RS01140 (MN093_01140) rnpM 236456..236728 (-) 273 WP_002088161.1 RNase P modulator RnpM -
  MN093_RS01145 (MN093_01145) nusA 236740..237855 (-) 1116 WP_241875723.1 transcription termination factor NusA -
  MN093_RS01150 (MN093_01150) rimP 237873..238343 (-) 471 WP_002146103.1 ribosome maturation factor RimP -
  MN093_RS01155 (MN093_01155) - 238677..242978 (-) 4302 WP_241875725.1 PolC-type DNA polymerase III -
  MN093_RS01160 (MN093_01160) - 243103..244803 (-) 1701 WP_078175371.1 proline--tRNA ligase -
  MN093_RS01165 (MN093_01165) rseP 244913..246169 (-) 1257 WP_002088169.1 RIP metalloprotease RseP -
  MN093_RS01170 (MN093_01170) dxr 246187..247329 (-) 1143 WP_002014547.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  MN093_RS01175 (MN093_01175) cdsA 247353..248144 (-) 792 WP_002088171.1 phosphatidate cytidylyltransferase -
  MN093_RS01180 (MN093_01180) - 248162..248938 (-) 777 WP_002014545.1 isoprenyl transferase -
  MN093_RS01185 (MN093_01185) frr 249024..249581 (-) 558 WP_000531506.1 ribosome recycling factor -
  MN093_RS01190 (MN093_01190) pyrH 249585..250307 (-) 723 WP_002014544.1 UMP kinase -
  MN093_RS01195 (MN093_01195) tsf 250374..251261 (-) 888 WP_002088177.1 translation elongation factor Ts -
  MN093_RS01200 (MN093_01200) rpsB 251365..252066 (-) 702 WP_002088178.1 30S ribosomal protein S2 -
  MN093_RS01205 (MN093_01205) codY 252421..253200 (-) 780 WP_241875727.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MN093_RS01210 (MN093_01210) hslU 253278..254669 (-) 1392 WP_002014539.1 ATP-dependent protease ATPase subunit HslU -
  MN093_RS01215 (MN093_01215) hslV 254692..255234 (-) 543 WP_002014538.1 ATP-dependent protease proteolytic subunit HslV -
  MN093_RS01220 (MN093_01220) xerC 255277..256176 (-) 900 WP_078175468.1 tyrosine recombinase XerC -
  MN093_RS01225 (MN093_01225) trmFO 256248..257552 (-) 1305 WP_002066796.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MN093_RS01230 (MN093_01230) topA 257601..259679 (-) 2079 WP_131246422.1 type I DNA topoisomerase -
  MN093_RS01235 (MN093_01235) dprA 259824..260693 (-) 870 WP_002014531.1 DNA-processing protein DprA -
  MN093_RS01240 (MN093_01240) sucD 260782..261684 (-) 903 WP_000115186.1 succinate--CoA ligase subunit alpha -
  MN093_RS01245 (MN093_01245) sucC 261704..262864 (-) 1161 WP_002014529.1 ADP-forming succinate--CoA ligase subunit beta -
  MN093_RS01250 (MN093_01250) - 263058..263831 (-) 774 WP_002014527.1 ribonuclease HII -
  MN093_RS01255 (MN093_01255) ylqF 263887..264777 (-) 891 WP_002128821.1 ribosome biogenesis GTPase YlqF -
  MN093_RS01260 (MN093_01260) lepB 264798..265349 (-) 552 WP_002066791.1 signal peptidase I -
  MN093_RS01265 (MN093_01265) rplS 265450..265794 (-) 345 WP_002014524.1 50S ribosomal protein L19 -
  MN093_RS01270 (MN093_01270) trmD 265941..266675 (-) 735 WP_002014522.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MN093_RS01275 (MN093_01275) rimM 266675..267190 (-) 516 WP_002014521.1 ribosome maturation factor RimM -
  MN093_RS01280 (MN093_01280) - 267312..267539 (-) 228 WP_002088196.1 KH domain-containing protein -
  MN093_RS01285 (MN093_01285) rpsP 267554..267826 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  MN093_RS01290 (MN093_01290) ffh 267927..269276 (-) 1350 WP_002014519.1 signal recognition particle protein -
  MN093_RS01295 (MN093_01295) - 269289..269621 (-) 333 WP_000891061.1 putative DNA-binding protein -
  MN093_RS01300 (MN093_01300) ftsY 269754..270743 (-) 990 WP_002088200.1 signal recognition particle-docking protein FtsY -
  MN093_RS01305 (MN093_01305) smc 270758..274327 (-) 3570 WP_131246421.1 chromosome segregation protein SMC -
  MN093_RS01310 (MN093_01310) rncS 274476..275213 (-) 738 WP_002033792.1 ribonuclease III -
  MN093_RS01315 (MN093_01315) acpP 275272..275505 (-) 234 WP_002014515.1 acyl carrier protein -
  MN093_RS01320 (MN093_01320) fabG 275575..276315 (-) 741 WP_241875729.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  MN093_RS01325 (MN093_01325) fabD 276315..277259 (-) 945 WP_131246420.1 ACP S-malonyltransferase -
  MN093_RS01330 (MN093_01330) plsX 277274..278266 (-) 993 WP_002128828.1 phosphate acyltransferase PlsX -
  MN093_RS01335 (MN093_01335) fapR 278263..278856 (-) 594 WP_000747354.1 transcription factor FapR -
  MN093_RS01340 (MN093_01340) recG 278945..280993 (-) 2049 WP_002014510.1 ATP-dependent DNA helicase RecG -
  MN093_RS01345 (MN093_01345) - 281418..283094 (-) 1677 WP_002066784.1 DAK2 domain-containing protein -
  MN093_RS01350 (MN093_01350) - 283117..283479 (-) 363 WP_002014507.1 Asp23/Gls24 family envelope stress response protein -
  MN093_RS01355 (MN093_01355) rpmB 283858..284046 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  MN093_RS01360 (MN093_01360) spoVM 284120..284200 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  MN093_RS01365 (MN093_01365) - 284267..284947 (-) 681 WP_002014506.1 thiamine diphosphokinase -
  MN093_RS01370 (MN093_01370) rpe 285048..285692 (-) 645 WP_002014505.1 ribulose-phosphate 3-epimerase -
  MN093_RS01375 (MN093_01375) rsgA 285695..286576 (-) 882 WP_002014503.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28791.05 Da        Isoelectric Point: 4.7251

>NTDB_id=663100 MN093_RS01205 WP_241875727.1 252421..253200(-) (codY) [Bacillus mycoides strain DSM 2048]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVCRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=663100 MN093_RS01205 WP_241875727.1 252421..253200(-) (codY) [Bacillus mycoides strain DSM 2048]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTATGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAAAACGAACGTATGAAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGTTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

80.695

100

0.807
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456