Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MN092_RS10835 Genome accession   NZ_CP093290
Coordinates   2137616..2138395 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis strain DSM 13     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2132616..2143395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN092_RS10815 (MN092_10815) trmFO 2133313..2134617 (+) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MN092_RS10820 (MN092_10820) xerC 2134684..2135598 (+) 915 WP_003181750.1 tyrosine recombinase XerC -
  MN092_RS10825 (MN092_10825) hslV 2135612..2136157 (+) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  MN092_RS10830 (MN092_10830) hslU 2136174..2137577 (+) 1404 WP_003181754.1 HslU--HslV peptidase ATPase subunit -
  MN092_RS10835 (MN092_10835) codY 2137616..2138395 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MN092_RS10840 (MN092_10840) flgB 2138749..2139138 (+) 390 WP_003181758.1 flagellar basal body rod protein FlgB -
  MN092_RS10845 (MN092_10845) flgC 2139138..2139590 (+) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  MN092_RS10850 (MN092_10850) fliE 2139604..2139921 (+) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  MN092_RS10855 (MN092_10855) fliF 2139972..2141573 (+) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  MN092_RS10860 (MN092_10860) fliG 2141587..2142603 (+) 1017 WP_003181768.1 flagellar motor switch protein FliG -
  MN092_RS10865 (MN092_10865) fliH 2142587..2143354 (+) 768 WP_016885763.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=663060 MN092_RS10835 WP_003181756.1 2137616..2138395(+) (codY) [Bacillus licheniformis strain DSM 13]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=663060 MN092_RS10835 WP_003181756.1 2137616..2138395(+) (codY) [Bacillus licheniformis strain DSM 13]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467