Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG735_RS15115 Genome accession   NZ_CP108549
Coordinates   3360275..3362479 (-) Length   734 a.a.
NCBI ID   WP_327323697.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01210     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3355275..3367479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG735_RS15100 (OG735_15130) - 3355644..3355961 (+) 318 WP_327323694.1 heavy-metal-associated domain-containing protein -
  OG735_RS15105 (OG735_15135) - 3356061..3358352 (+) 2292 WP_327323695.1 heavy metal translocating P-type ATPase -
  OG735_RS15110 (OG735_15140) - 3358753..3360042 (-) 1290 WP_327323696.1 citrate synthase -
  OG735_RS15115 (OG735_15145) recD/recD2/recDB 3360275..3362479 (-) 2205 WP_327323697.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG735_RS15120 (OG735_15150) - 3363563..3364360 (-) 798 WP_327328322.1 sugar phosphate isomerase/epimerase family protein -
  OG735_RS15125 (OG735_15155) - 3364405..3365649 (-) 1245 WP_327323698.1 dihydrodipicolinate synthase family protein -
  OG735_RS15130 (OG735_15160) - 3365646..3366797 (-) 1152 WP_327323699.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 79243.80 Da        Isoelectric Point: 6.7884

>NTDB_id=662741 OG735_RS15115 WP_327323697.1 3360275..3362479(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01210]
MSNPAVVEGVLERITYANEENGYTVARVDTGRGSDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVDNYTTVLPAT
IQGIRRYLGSGLIKGIGPRIAERIVEHFGIDTLDIIEQQPKKLIEVPGLGPKRTKLIGVAWEEQKAIKEVMVFLQGVGVS
TSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADKIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEEQLI
SDAVKLLQVDTGLVIECLAELAGEEEGVVREKVPAPDGGEPVTAVYLVPFHRAEISLAAQLRRLLGAAEDRMPGFQDVVW
DKALAWLAERTGAELAPEQEAAVRLALTKKVAVLTGGPGCGKSFTVRSIVELARARKAKVVLAAPTGRAAKRLAELTGAE
ASTVHRLLELRPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLADG
GPVPNVRLTRIFRQAQQSGVVTNAHRINSGVQPITSGLSDFFLFVEEETEDAGKLTVDVAARRIPARFGLDPRRDVQVLA
PMHRGPAGAGTLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGKNGVFNGTVGVVTSLQLDDQRLTVLTD
EDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVSA
GRRFTALDHRLTGG

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=662741 OG735_RS15115 WP_327323697.1 3360275..3362479(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01210]
ATGTCCAATCCAGCAGTGGTCGAAGGGGTCCTCGAGCGGATCACGTATGCCAACGAGGAGAACGGCTACACGGTCGCCCG
GGTCGACACGGGACGCGGCAGTGATCTCCTCACGGTGGTCGGCTCGCTGCTCGGCGCGCAGCCGGGCGAGTCGTTGCGTA
TGGAGGGCCGTTGGGGCTCCCACCCCCAGTACGGCAAGCAGTTCACCGTGGACAACTACACGACCGTCCTGCCGGCCACG
ATCCAGGGCATACGCCGTTACCTCGGCTCGGGCCTGATCAAGGGAATCGGCCCCCGGATCGCCGAGCGCATCGTCGAGCA
CTTCGGCATCGACACGCTCGACATCATCGAGCAGCAGCCGAAGAAGCTCATCGAGGTCCCCGGACTCGGCCCGAAGCGGA
CGAAGTTGATCGGCGTCGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAAGGGGTCGGCGTCTCC
ACGTCCATCGCGGTGCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCGGTCGTGAAGAACCAGCCGTACCGCCTCGC
CGCCGACGTCTGGGGCATCGGTTTCCTCACCGCCGACAAGATCGCGCAGGCGGTCGGCATACCGCACGACAGCCCGGAGC
GGGTCAAGGCGGGGCTGCAGTACGCCCTGTCGCAGTCCACCGACCAAGGGCACTGCTTCCTGCCCGAGGAGCAGCTGATC
AGCGACGCGGTGAAGCTGCTCCAGGTGGACACGGGCCTTGTCATCGAGTGCCTCGCCGAGCTCGCGGGCGAGGAGGAAGG
GGTCGTACGGGAGAAGGTGCCGGCCCCGGACGGCGGCGAGCCGGTCACTGCGGTGTATCTGGTGCCCTTCCACCGGGCCG
AGATCTCCCTCGCCGCCCAGCTGCGTCGGCTGCTGGGAGCCGCGGAGGACCGGATGCCGGGCTTCCAGGACGTCGTCTGG
GACAAGGCGTTGGCCTGGCTCGCGGAGCGTACGGGCGCGGAGCTCGCGCCCGAGCAGGAGGCGGCGGTCAGGCTTGCGCT
CACCAAGAAGGTCGCCGTTCTGACCGGCGGTCCCGGCTGCGGCAAGTCGTTCACGGTCCGGTCCATCGTGGAGCTGGCCC
GCGCCAGGAAGGCGAAGGTGGTGCTGGCCGCACCGACCGGGCGCGCGGCCAAACGGCTCGCCGAACTCACCGGCGCCGAG
GCGTCCACCGTGCACCGGCTGCTCGAGCTCAGGCCCGGCGGCGACGCGGCGTACGACAGGGATCGGCCGCTCGACGCGGA
TCTGGTGGTGGTCGACGAGGCGTCCATGCTCGATCTGCTGCTCGCCAACAAGCTGGTCAAGGCCGTTGCCCCCGGCGCGC
ATCTGCTGCTGGTGGGGGATGTGGACCAGCTGCCGAGCGTCGGTGCCGGCGAGGTGCTGCGCGACCTGCTCGCCGACGGC
GGGCCCGTGCCGAACGTCCGGCTGACCCGGATCTTCCGGCAGGCCCAGCAGTCCGGCGTCGTCACCAACGCCCACCGCAT
CAACTCCGGTGTTCAGCCCATCACTTCGGGTCTCTCCGACTTCTTTCTCTTCGTGGAGGAGGAGACGGAGGACGCGGGAA
AGCTCACGGTGGACGTGGCGGCCCGCCGCATCCCGGCCAGATTCGGCCTGGATCCGCGGCGCGATGTGCAGGTGCTCGCA
CCCATGCACCGCGGCCCGGCCGGCGCCGGCACGCTCAACGGCCTGCTCCAGCAGGCGATCACGCCCGCCAGGCCCGACCT
TCCCGAGAAGCGCTTCGGCGGCCGTGTCTTCCGCGTCGGCGACAAGGTCACCCAGATTCGCAACAACTACGAGAAGGGAA
AGAACGGCGTCTTCAACGGCACGGTCGGCGTGGTCACCTCGCTCCAGCTGGACGACCAGCGGCTGACGGTGCTGACGGAC
GAGGACGAGGAGGTTCCGTACGACTTCGACGAACTGGACGAGCTGGCACATGCCTACGCCGTGACCATCCACCGCTCACA
GGGCAGCGAATACCCGGCCGTGGTGATCCCGGTCACGACCGGAGCCTGGATGATGCTCCAGCGGAACCTCCTCTACACGG
CGGTCACCCGGGCCAAGAAGCTCGTCGTGCTGGTCGGCTCCCGTAAGGCGATAGGACAGGCAGTACGCACTGTTTCCGCA
GGCAGACGCTTCACCGCGCTCGACCACCGGCTGACCGGCGGCTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(657-705)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-637)

AAA domain (AAA_30)

(334-512)

Helix-hairpin-helix containing domain (HHH_RecD2)

(143-233)

Helix-hairpin-helix domain (HHH_5)

(93-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.117

100

0.366