Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG735_RS13760 Genome accession   NZ_CP108549
Coordinates   3028622..3030355 (+) Length   577 a.a.
NCBI ID   WP_327323458.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01210     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3023622..3035355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG735_RS13730 (OG735_13760) - 3024955..3025206 (-) 252 WP_327323455.1 hypothetical protein -
  OG735_RS13750 (OG735_13780) - 3026749..3027048 (+) 300 WP_327323456.1 YtxH domain-containing protein -
  OG735_RS13755 (OG735_13785) - 3027085..3028530 (+) 1446 WP_327323457.1 FGGY family carbohydrate kinase -
  OG735_RS13760 (OG735_13790) rcrP 3028622..3030355 (+) 1734 WP_327323458.1 ABC transporter ATP-binding protein Regulator
  OG735_RS13765 (OG735_13795) rcrQ 3030352..3032274 (+) 1923 WP_327323459.1 ABC transporter ATP-binding protein Regulator
  OG735_RS13770 (OG735_13800) - 3032435..3033688 (-) 1254 WP_327323460.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62831.99 Da        Isoelectric Point: 5.4147

>NTDB_id=662736 OG735_RS13760 WP_327323458.1 3028622..3030355(+) (rcrP) [Streptomyces sp. NBC_01210]
MLIRLLRTHLRPYKKPIALLVALQLLQTSATLYLPTLNADIIDNGVVKGDTGYILELGALMIAVSVVQVFCNMGAVFYGA
RTAAALGRDVRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDEYEKERFREANNELTDVSLSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRVDSGAIQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTDSSVVP
PTEPVRQLRRHGHLEVRNVEFRYPGAEESVLRSVELVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTGGEVLVDGVDVR
ELDPALMAKTVGLVPQKPYLFSGTVATNLRYGKPGASDEELWQALEVAQAADFVRELEAGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALALETAESTVVIVAQRVSTIRDADRIVVLDEGQVVGTGSHHELMESN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=662736 OG735_RS13760 WP_327323458.1 3028622..3030355(+) (rcrP) [Streptomyces sp. NBC_01210]
GTGCTAATACGACTACTGCGGACGCACCTGCGTCCGTACAAGAAACCCATCGCCCTGCTCGTGGCTCTCCAGCTGCTGCA
GACCAGCGCCACCCTCTATCTGCCCACCCTGAACGCGGACATCATTGACAACGGTGTCGTGAAGGGGGACACGGGTTACA
TCCTGGAGCTCGGCGCGCTCATGATCGCCGTCAGCGTCGTCCAGGTGTTCTGCAACATGGGAGCGGTCTTCTACGGCGCA
CGGACCGCAGCCGCGCTCGGGCGGGACGTCCGGGCAGCCGTCTTCGACCGGGTGCAGAGCTTCTCCGCGCGGGAGGTCGG
ACAGTTCGGTGCGCCGTCGCTGATCACGCGTACGACCAATGACGTCCAGCAGGTGCAGATGCTGGTCCTGATGGCGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTGCCGCTGTCGGCGGTG
CTGCTGGCCGTGGTGCCGGTGCTGGGCATCGCGGTGTCGCTGATCGTCAAGAGGATGCGGCCACTGTTCCGCACCATGCA
GGAGCGCCTGGACACCGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGCGTCATTCGCGCCTTCGTACGGGACG
AGTACGAGAAGGAGCGCTTCCGCGAGGCCAACAACGAGCTCACGGACGTGTCACTGTCCACCGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTCATGACGGTGGTGAATGTGTCGTCCATCGCCGTCGTCTGGTTCGGTGCGCACCGGGTCGACAGCGG
CGCCATACAGATCGGCGCGCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGGATCGAGGAGGTCCTGGGCACGGATTCGAGCGTGGTGCCG
CCGACCGAGCCGGTACGGCAGCTGCGCAGGCACGGGCATCTGGAGGTACGGAACGTCGAGTTCCGCTACCCGGGGGCCGA
GGAGTCGGTGCTACGGAGCGTCGAACTGGTGGCGCGGCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGATGTGACGGGCGGCGAGGTGCTCGTCGACGGCGTGGATGTGCGC
GAACTCGATCCGGCGCTGATGGCGAAGACGGTGGGGCTCGTGCCCCAGAAGCCGTATCTCTTCTCCGGGACCGTGGCCAC
CAATCTGCGGTACGGCAAGCCCGGCGCGAGCGACGAAGAGCTGTGGCAGGCCCTCGAGGTGGCGCAGGCCGCAGACTTCG
TACGGGAGCTGGAAGCCGGGCTGAACGCGCCGATCGCACAGGGCGGGACCAATGTCTCCGGCGGCCAGCGGCAGCGGCTC
GCGATCGCCAGGACGCTGGTGCAGCGGCCCGAGATCTATCTCTTCGACGACTCCTTCTCGGCGCTGGACTACGCCACGGA
CGCGGCATTGCGCCGGGCGCTGGCGCTCGAGACCGCGGAGTCGACCGTGGTGATCGTCGCCCAGCGGGTGTCCACCATCC
GTGACGCCGACCGGATCGTGGTTCTGGACGAGGGGCAGGTCGTGGGGACGGGAAGCCATCACGAGCTGATGGAGAGCAAC
GAGACCTACCGCGAGATCGTGCTCTCGCAGCTGACGGAGGCTGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.455

95.321

0.395