Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MNY58_RS06470 Genome accession   NZ_CP093217
Coordinates   1335399..1337786 (+) Length   795 a.a.
NCBI ID   WP_099089229.1    Uniprot ID   A0A2C6VLG8
Organism   Staphylococcus edaphicus strain CCM 8731     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1330399..1342786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY58_RS06450 (MNY58_06450) sal 1330650..1332281 (+) 1632 WP_099089225.1 Sal family ABC-F type ribosomal protection protein -
  MNY58_RS06455 (MNY58_06455) - 1332342..1333484 (+) 1143 WP_099089226.1 cysteine desulfurase family protein -
  MNY58_RS06460 (MNY58_06460) mnmA 1333485..1334597 (+) 1113 WP_099089227.1 tRNA 2-thiouridine(34) synthase MnmA -
  MNY58_RS06465 (MNY58_06465) - 1334730..1335395 (+) 666 WP_099089228.1 tetratricopeptide repeat protein -
  MNY58_RS06470 (MNY58_06470) recD2 1335399..1337786 (+) 2388 WP_099089229.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MNY58_RS06475 (MNY58_06475) alaS 1338126..1340757 (+) 2632 Protein_1238 alanine--tRNA ligase -
  MNY58_RS06480 (MNY58_06480) - 1340827..1341087 (+) 261 WP_099089231.1 IreB family regulatory phosphoprotein -
  MNY58_RS06485 (MNY58_06485) ruvX 1341091..1341519 (+) 429 WP_099089232.1 Holliday junction resolvase RuvX -
  MNY58_RS06490 (MNY58_06490) - 1341536..1341862 (+) 327 WP_017724645.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89609.48 Da        Isoelectric Point: 4.6394

>NTDB_id=662612 MNY58_RS06470 WP_099089229.1 1335399..1337786(+) (recD2) [Staphylococcus edaphicus strain CCM 8731]
MGDPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESSETFDSMPTIVGFFPEIAEGDVYTFKGQVVTHPKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPTVLEKVPSLPKKKQKQIAEQIASNQETERII
IRLHDLGFGPKLAMSIYQAYLGETLKVVEYKPYQLVYDVKGIGFNKADTLARNVGIQFNDVERLKAGLLYVLEEECIKQG
HTYLPTQNVLEMTQEMLSQAPSEIIEIQQLENVLQELVKDTKLIQQEHEVAIPSLYYSELKSVQNLYRNYVYTNKLKQIE
QSDLLMEIGEIEERNQVNYANSQKDALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLNYDDYQNDDYPVVLG
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILENEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIQLAHQMKLGEPINITQRFHDRNFINCATDQIPSFVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNMVLQDILNPKEKDTREIEFGDVVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFVRQDLIELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIALKTHGQVRMTQLCSFLKAYFNNDMTTEGEETSNAFDADIILTEDNIFKINPMINMGDISPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=662612 MNY58_RS06470 WP_099089229.1 1335399..1337786(+) (recD2) [Staphylococcus edaphicus strain CCM 8731]
ATGGGAGACCCTACATTATTTAATAATTCAATGATTAAAGGAACCGTTGATGCGATTTTATTTCAAAATAAAGAAAACTT
TTATACGGTTTTGAAAGTTGATACGATTGAATCTAGCGAAACATTTGATTCAATGCCTACAATAGTAGGGTTTTTCCCAG
AAATTGCTGAAGGTGATGTTTATACATTTAAAGGCCAAGTTGTCACGCATCCAAAATATGGTAAGCAACTTAAAGCTGAA
ACATTTGAAAAAGAATTACCACAAACTAAAGAGGCAATTATCAGTTATTTATCAAGTGATTTATTTAAAGGTATAGGTAA
GAAAACCGCACAAAGTATCGTCAATAAACTCGGTGAAAATGCAATTAGCGACATTTTAAATGATCCAACAGTTTTGGAAA
AGGTACCTAGTTTACCTAAGAAAAAACAAAAGCAAATAGCCGAACAAATTGCTAGTAATCAAGAAACTGAACGAATTATA
ATTCGGTTACACGATTTAGGATTTGGACCTAAATTAGCAATGTCTATTTATCAAGCTTACTTAGGAGAAACACTAAAAGT
AGTTGAATATAAGCCGTATCAACTTGTATATGATGTAAAAGGAATAGGATTTAATAAAGCGGACACATTAGCACGTAATG
TTGGGATACAATTTAATGATGTGGAAAGACTTAAAGCAGGCTTATTATATGTACTAGAAGAAGAGTGTATTAAACAGGGG
CACACGTATTTACCGACTCAGAATGTACTAGAAATGACTCAAGAAATGCTTTCACAAGCGCCCAGTGAAATAATTGAAAT
ACAACAACTAGAAAATGTGTTACAAGAATTGGTTAAGGATACAAAATTAATTCAACAAGAGCACGAAGTCGCCATACCAA
GTTTATATTATTCAGAATTAAAAAGTGTTCAAAATCTCTATCGTAACTATGTCTATACGAATAAGCTAAAGCAAATTGAA
CAATCAGATCTTTTAATGGAAATTGGGGAAATTGAAGAACGAAACCAAGTGAACTATGCGAATTCCCAAAAAGATGCATT
ACAAACGGCTATAAACTCTAAAATAATGTTGCTTACCGGTGGTCCTGGTACAGGTAAAACAACTGTTATCAAAGGTATAG
TAGAATTATACGCAGAGATTCACGGGCTTTCATTAAATTATGACGATTATCAAAACGATGATTATCCAGTCGTTTTAGGT
GCACCGACTGGTAGAGCTTCGAAACGCTTAGCCGAATCTACCGGACTAGAAGCGATGACGATTCATCGCTTGATAGGATG
GAACCAAGATACACAACCAGAAGATATTTTAGAAAATGAGATATCAGCAAAATTAATCATCATTGATGAAATGTCTATGG
TAGATACCTGGTTATTTCATCAATTCTTAAGTGCCGTTCCTATAGACGCGCAAGTTATATTAGTAGGCGATGAGGACCAA
TTACCTTCAGTTGGACCAGGCCAAGTCTTTAAAGATTTGATAGATTCAAAAGTGATTCCTCGTGTCAATTTAACGGAAGT
TTATAGACAACAAGACGGTTCTAGTATTATTCAATTAGCACATCAAATGAAATTAGGTGAACCAATAAATATAACGCAAC
GGTTTCATGATAGGAATTTTATAAATTGTGCTACGGATCAAATTCCATCGTTTGTAGAAAAAGTAGTTTCTAGTGCTGTT
AATAAAGGTTATGACATGAGCGATATTCAAGTTCTAGCACCCATGTATAAAGGCTCTGCGGGTATTAAGAAATTAAACAT
GGTATTACAAGATATTTTAAATCCTAAAGAAAAAGACACTCGTGAAATAGAATTTGGAGATGTTGTATTTAGAAAAGGCG
ATAAAGTATTACAACTCGTAAATCGACCAAGTGATAATATTTTTAACGGTGATATTGGTGTCATAGTAGGTATTTTTTGG
GCGAAGGAAAATGCGCTTAACAAAGACGTGTTGGTTGTTGATTTTGAAGGTAATGAAATAACGTTTGTGCGTCAAGACTT
AATCGAATTAACACATGCATATTGCACTTCTATTCATAAATCACAAGGGTCTGAATTTCCAATTGTAATCATGCCTATGG
TAAAACAATACTTTAGAATGTTACAAAAGCCTATATTATATACTGGTCTAACAAGAGCAAAACAATCGCTCGTGTTTTTA
GGGGATCCACAAGCATTTGATATAGCCCTAAAAACACATGGTCAAGTCAGAATGACACAATTATGCTCATTTTTAAAAGC
ATACTTCAACAATGATATGACTACTGAAGGGGAAGAAACAAGTAACGCTTTTGATGCAGACATCATTTTAACAGAAGACA
ATATATTTAAAATTAACCCGATGATTAATATGGGAGATATTTCGCCGTATGACTTTGTTGAAGATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C6VLG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.378

99.874

0.503