Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG233_RS20635 Genome accession   NZ_CP108536
Coordinates   4732937..4735192 (+) Length   751 a.a.
NCBI ID   WP_275494129.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01218     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4727937..4740192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG233_RS20595 (OG233_20590) - 4727943..4729388 (+) 1446 WP_327269474.1 AAA family ATPase -
  OG233_RS20600 (OG233_20595) - 4729394..4730143 (+) 750 WP_327269475.1 HNH endonuclease -
  OG233_RS20605 (OG233_20600) - 4730168..4730380 (-) 213 WP_327269476.1 DUF397 domain-containing protein -
  OG233_RS20610 (OG233_20605) - 4730364..4731191 (-) 828 WP_327269477.1 helix-turn-helix transcriptional regulator -
  OG233_RS20615 (OG233_20610) - 4731337..4731576 (+) 240 WP_327269478.1 hypothetical protein -
  OG233_RS20620 (OG233_20615) - 4731573..4731860 (+) 288 Protein_4058 hypothetical protein -
  OG233_RS20625 (OG233_20620) - 4732052..4732261 (-) 210 WP_327269479.1 hypothetical protein -
  OG233_RS20630 (OG233_20625) - 4732281..4732634 (-) 354 WP_275494128.1 hypothetical protein -
  OG233_RS20635 (OG233_20630) recD/recD2/recDB 4732937..4735192 (+) 2256 WP_275494129.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG233_RS20640 (OG233_20635) - 4735409..4736707 (+) 1299 WP_275494130.1 citrate synthase -
  OG233_RS20645 (OG233_20640) - 4737420..4739744 (-) 2325 WP_327269480.1 heavy metal translocating P-type ATPase -
  OG233_RS20650 (OG233_20645) - 4739872..4740177 (-) 306 WP_327269481.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81589.38 Da        Isoelectric Point: 7.2005

>NTDB_id=662477 OG233_RS20635 WP_275494129.1 4732937..4735192(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01218]
MPSAPTPPTPPHLAVLEGVLERVTYANEENGYTVARVDTGRGGDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVE
NYTTVLPATIQGIRRYLGSGLIKGIGPVMADRITTHFGTETLDIIENAPKRLVEVPGLGPKRTKKIADAWEEQKAIKEVM
IFLQSVGVSTSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVRAGLQYALSQSCDQGH
CYLPEERLIADGVKLLQVDTGLVIDCLAELAADPEGVVREKVPSPEGGEPVTAVYLVPFHRAELSLAGQVRRLLRTPEDR
MPAFRDVDWEKALEWLARRTGATLAPEQEAAVRLALSRKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAK
RLSELTGAEASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGE
VLRDLLAEGGPVPAVRLTRIFRQAQHSGVVTNAHRINSGQPPLTHGLDDFFLFVEDETEDAGVLAVDVAARRLPRKFGLD
PRRDIQVLTPMHRGLAGAGHLNTLLQQVITPGRPELPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTLGVVTSLDTD
EQRLTVRTDEDEEIGYDFDELDELAHAYAMTIHRSQGSEYPAVVVPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAI
GQAVRTVSAGRRFTALDFRLRGGSEEDPPKK

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=662477 OG233_RS20635 WP_275494129.1 4732937..4735192(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01218]
ATGCCCTCCGCGCCCACTCCGCCCACCCCACCCCACCTGGCCGTCCTCGAAGGTGTCCTGGAGCGGGTCACGTACGCCAA
CGAGGAGAACGGGTACACCGTCGCCCGCGTCGACACCGGGCGCGGCGGCGATCTGCTCACCGTGGTGGGCTCGCTGCTCG
GCGCGCAGCCGGGGGAGTCGCTGCGGATGGAGGGGCGTTGGGGCTCGCACCCGCAGTACGGCAAGCAGTTCACCGTGGAG
AACTACACGACGGTGCTCCCCGCGACCATCCAGGGCATCCGCCGCTACCTCGGCTCCGGGCTGATCAAGGGGATCGGGCC
GGTCATGGCCGACCGGATCACCACCCACTTCGGCACCGAGACCCTCGACATCATCGAGAACGCACCGAAGCGGCTCGTCG
AGGTTCCCGGGCTCGGCCCGAAGCGCACGAAGAAGATCGCCGACGCGTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATG
ATCTTCCTCCAGTCGGTCGGGGTCTCGACCTCGATCGCCGTGCGGATCTACAAGAAGTACGAGGACGCGTCGATCTCCGT
CGTGAAGAACCAGCCCTACCGGCTGGCCGCCGACGTGTGGGGCATCGGCTTCCTGACCGCCGACCGGATCGCGCAGGCGG
TCGGCATCCCGCACGACAGCCCGGAACGGGTGCGGGCCGGACTCCAGTACGCCCTCTCCCAGTCCTGCGACCAGGGCCAC
TGCTACCTCCCCGAGGAACGTTTGATCGCGGACGGGGTGAAGCTGCTCCAGGTCGACACCGGGCTGGTCATCGACTGCCT
CGCCGAACTGGCCGCCGACCCGGAGGGCGTCGTACGGGAGAAGGTGCCGTCGCCGGAGGGCGGGGAACCGGTGACGGCGG
TCTACCTCGTGCCGTTCCACCGGGCGGAGCTCTCCCTCGCCGGGCAGGTGCGCAGGCTGCTGCGGACTCCGGAGGACCGG
ATGCCCGCGTTCCGGGACGTGGACTGGGAGAAGGCGCTGGAGTGGCTGGCGCGGCGGACGGGCGCCACCCTCGCGCCCGA
GCAGGAGGCGGCGGTCCGGCTCGCGTTGAGCCGGAAGGTGGCCGTGCTGACCGGCGGACCGGGATGCGGGAAGTCGTTCA
CCGTACGCTCCGTGGTCGAGCTGGCCCGCGCGAAGAAGGCGAAGGTCGTGCTCGCGGCTCCCACCGGGCGGGCCGCGAAA
CGCCTCTCCGAGCTGACCGGGGCCGAGGCGTCCACCGTGCACCGGCTGTTGGAACTGAAGCCGGGCGGCGACGCCGCGTA
CGACCGGGACCGTCCGCTCGACGCCGATCTGGTCGTCGTCGACGAGGCGTCCATGCTCGATCTGCTCCTCGCCAACAAGC
TCGTGAAGGCGGTGGCGCCCGGTGCCCACCTGCTGCTCGTCGGCGACGTGGACCAGTTGCCGTCGGTCGGCGCGGGCGAG
GTGCTGCGGGACCTGCTCGCCGAGGGCGGACCCGTCCCCGCCGTCCGGCTGACCCGCATCTTCCGCCAGGCCCAGCACTC
CGGCGTGGTCACCAACGCCCACCGCATCAACTCCGGCCAGCCCCCGCTCACCCACGGGCTCGACGACTTCTTCCTCTTCG
TGGAGGACGAGACGGAGGACGCCGGGGTGCTCGCCGTGGACGTGGCCGCCCGCCGCCTCCCGAGGAAGTTCGGCCTCGAT
CCGCGCCGCGACATCCAGGTCCTCACCCCGATGCACCGGGGTCTCGCCGGCGCCGGTCACCTCAACACCCTGCTCCAGCA
GGTCATCACGCCGGGCCGCCCCGAGTTGCCGGAGAAGCGGTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTGACCC
AGATCCGCAACAACTACGACAAGGGGGAGAACGGTGTCTTCAACGGCACCCTCGGCGTCGTGACCTCACTCGACACCGAC
GAGCAGCGGCTGACCGTGCGCACCGACGAGGACGAGGAGATCGGCTACGACTTCGACGAGCTGGACGAGCTGGCGCACGC
CTACGCCATGACGATCCATCGCTCCCAGGGCAGCGAGTACCCGGCCGTCGTCGTCCCCGTCACCACCAGCGCCTGGATGA
TGCTCCAGCGCAACCTCCTCTACACGGCGGTGACGCGGGCCAAGAAGCTCGTCGTCCTCGTCGGTTCGCGGAAGGCGATC
GGGCAGGCGGTCCGCACGGTTTCCGCCGGGAGGCGCTTCACGGCACTGGATTTCCGGCTTCGCGGAGGGTCCGAGGAAGA
CCCACCGAAAAAATGA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(581-647)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(666-714)

AAA domain (AAA_30)

(343-522)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-242)

Helix-hairpin-helix domain (HHH_5)

(102-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.761

100

0.366