Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG609_RS28080 Genome accession   NZ_CP108529
Coordinates   6250105..6251838 (-) Length   577 a.a.
NCBI ID   WP_327275368.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01224     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6245105..6256838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG609_RS28070 (OG609_28140) - 6246924..6248027 (+) 1104 WP_327275366.1 RNA polymerase sigma factor -
  OG609_RS28075 (OG609_28145) - 6248174..6250105 (-) 1932 WP_327275367.1 ABC transporter ATP-binding protein -
  OG609_RS28080 (OG609_28150) rcrP 6250105..6251838 (-) 1734 WP_327275368.1 ABC transporter ATP-binding protein Regulator
  OG609_RS28085 (OG609_28155) - 6252008..6253453 (-) 1446 WP_327275369.1 FGGY family carbohydrate kinase -
  OG609_RS28090 (OG609_28160) - 6253524..6253823 (-) 300 WP_327275370.1 YtxH domain-containing protein -
  OG609_RS28110 (OG609_28180) - 6254675..6254803 (-) 129 WP_327275371.1 hypothetical protein -
  OG609_RS28115 (OG609_28185) - 6254951..6255157 (+) 207 WP_327275372.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62737.84 Da        Isoelectric Point: 5.3848

>NTDB_id=662338 OG609_RS28080 WP_327275368.1 6250105..6251838(-) (rcrP) [Streptomyces sp. NBC_01224]
MLIKLLRAYLGPYKKPILLLVLLQLLQTCATLYLPTLNADIIDSGVVKGDTGYILEFGGIMIAVSIAQVVCNMGAVYYGA
RTASALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQERVDTVNRVLREQITGNRVIRAFVRDRYEEERFRGANNELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PVKPISELRAHGHLEVRGADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEALEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALSQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
DTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=662338 OG609_RS28080 WP_327275368.1 6250105..6251838(-) (rcrP) [Streptomyces sp. NBC_01224]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGTCCGTACAAGAAACCCATCCTGCTCCTGGTCCTCCTTCAACTCCTGCA
GACCTGCGCCACCCTCTATCTGCCCACCCTGAACGCCGACATCATCGACAGCGGTGTCGTCAAGGGGGACACGGGCTACA
TCCTGGAGTTCGGCGGCATCATGATCGCCGTCAGCATCGCCCAGGTGGTCTGCAACATGGGGGCCGTCTACTACGGCGCC
CGCACGGCGTCCGCCCTCGGCCGTGATGTCCGGGCGTCGGTCTTCGACCGGGTGCAGTCGTTCTCGGCGCGTGAGGTCGG
GCGGTTCGGCGCACCCTCGCTGATCACACGTACAACCAATGATGTCCAGCAGGTCCAGATGCTCGTGCTGATGACGTTCA
CCCTGATGGTGTCGGCACCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTTTCGGCCGTG
CTGCTCGCGGTGGTACCGGTGCTCGGCATCGCGGTGAGCCTGATCGTCAAGCGGATGCGGCCGCTGTTCCGCACCATGCA
GGAACGGGTCGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGTGACC
GTTACGAGGAGGAGCGTTTCCGCGGCGCGAACAACGAGCTGACCGATGTGGCGCTGTCCACGGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTTGTGAATGTGTCCTCGATCGCCGTGGTCTGGTTCGGTGCCCACCGCATCGACAGCGG
CGGCATGGAGATCGGTGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCGAGCGTGGTGCCG
CCGGTCAAGCCGATCAGCGAGCTGCGCGCCCATGGTCATCTGGAGGTCCGCGGCGCGGACTTCCGTTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGTCGGTGGATCTGGTGGCCCGTCCCGGCGAGACCACCGCGATCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGACTCGTACCGCGGCTGTTCGATGTGACGGACGGCCAGGTACTGGTCGACGGCACGGACGTACGG
ACGCTGGAGCCGGCGCTGCTGGCGAAGACCGTGAGTCTCGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGCGCTGGAACACGGCCTGCACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGACAGCGGCAACGTCTG
GCGATCGCCAGGACACTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTCGACTATGCGACCGA
CGCCGCACTGCGCGGGGCGCTCTCGCAGGAGACGGCCGAGGCCACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGCTCCGGCACCCATCACGAGCTGATGGACGGCAAT
GACACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.137

100

0.406