Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | MNU35_RS06390 | Genome accession | NZ_CP093170 |
| Coordinates | 1330614..1331681 (+) | Length | 355 a.a. |
| NCBI ID | WP_002446533.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain TMDU-128 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1325614..1336681
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MNU35_RS06360 (MNU35_06365) | - | 1326032..1327492 (+) | 1461 | WP_002489997.1 | rhomboid family intramembrane serine protease | - |
| MNU35_RS06365 (MNU35_06370) | - | 1327476..1327676 (+) | 201 | WP_002446537.1 | YqgQ family protein | - |
| MNU35_RS06370 (MNU35_06375) | - | 1327676..1328662 (+) | 987 | WP_002446536.1 | ROK family glucokinase | - |
| MNU35_RS06375 (MNU35_06380) | - | 1328662..1328988 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| MNU35_RS06380 (MNU35_06385) | - | 1328988..1329611 (+) | 624 | WP_002446535.1 | MBL fold metallo-hydrolase | - |
| MNU35_RS06385 (MNU35_06390) | comGA | 1329668..1330642 (+) | 975 | WP_002446534.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| MNU35_RS06390 (MNU35_06395) | comGB | 1330614..1331681 (+) | 1068 | WP_002446533.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| MNU35_RS06395 (MNU35_06400) | comGC | 1331699..1332016 (+) | 318 | WP_002446532.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| MNU35_RS06400 (MNU35_06405) | comGD | 1332006..1332443 (+) | 438 | WP_002446531.1 | competence type IV pilus minor pilin ComGD | - |
| MNU35_RS06405 (MNU35_06410) | - | 1332430..1332723 (+) | 294 | WP_002446530.1 | hypothetical protein | - |
| MNU35_RS06410 (MNU35_06415) | - | 1332647..1333132 (+) | 486 | Protein_1231 | competence type IV pilus minor pilin ComGF | - |
| MNU35_RS06415 (MNU35_06420) | - | 1333302..1333814 (+) | 513 | WP_002457723.1 | shikimate kinase | - |
| MNU35_RS06420 (MNU35_06425) | gcvT | 1334032..1335123 (+) | 1092 | WP_002457722.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| MNU35_RS06425 (MNU35_06430) | gcvPA | 1335143..1336489 (+) | 1347 | WP_002446526.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 42350.56 Da Isoelectric Point: 10.0598
>NTDB_id=662111 MNU35_RS06390 WP_002446533.1 1330614..1331681(+) (comGB) [Staphylococcus epidermidis strain TMDU-128]
MKKLSINTFKYKRNKYLTEIQSINLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNCLFKEANRGLPLPTILMNLQCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
MKKLSINTFKYKRNKYLTEIQSINLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNCLFKEANRGLPLPTILMNLQCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
Nucleotide
Download Length: 1068 bp
>NTDB_id=662111 MNU35_RS06390 WP_002446533.1 1330614..1331681(+) (comGB) [Staphylococcus epidermidis strain TMDU-128]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAAACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCTTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAG
AGGGCTCCCGTTACCTACTATATTAATGAATCTACAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAATTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAAACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCTTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAG
AGGGCTCCCGTTACCTACTATATTAATGAATCTACAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAATTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
48.596 |
100 |
0.487 |
| comGB | Staphylococcus aureus N315 |
48.596 |
100 |
0.487 |