Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG289_RS17115 Genome accession   NZ_CP108513
Coordinates   3883909..3885642 (+) Length   577 a.a.
NCBI ID   WP_327314890.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01235     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3878909..3890642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG289_RS17085 (OG289_17110) - 3879773..3880708 (+) 936 WP_327314887.1 NADP-dependent oxidoreductase -
  OG289_RS17105 (OG289_17130) - 3881840..3882145 (+) 306 WP_327314888.1 YtxH domain-containing protein -
  OG289_RS17110 (OG289_17135) - 3882320..3883774 (+) 1455 WP_327314889.1 FGGY family carbohydrate kinase -
  OG289_RS17115 (OG289_17140) rcrP 3883909..3885642 (+) 1734 WP_327314890.1 ABC transporter ATP-binding protein Regulator
  OG289_RS17120 (OG289_17145) rcrQ 3885642..3887570 (+) 1929 WP_327314891.1 ABC transporter ATP-binding protein Regulator
  OG289_RS17125 (OG289_17150) - 3887710..3889035 (-) 1326 WP_327314892.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62599.88 Da        Isoelectric Point: 6.1928

>NTDB_id=661972 OG289_RS17115 WP_327314890.1 3883909..3885642(+) (rcrP) [Streptomyces sp. NBC_01235]
MLIRLLRTYLRPYRKPITLLVLLQFLQTCATLYLPTLNAHIIDKGVVEGDTGYILSFGGVMIGISLAQVVCNIGAVYYGA
RTAAALGRDVRAAVFDRVQSFSAREIGHFGAPTLITRTTNDVQQIQMLTLMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPTLGICVTLIVRRLRPLFRSMQVKLDTVNRVLREQISGNRVIRAFVRDEYEQQRFRKANADLTDISLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PMAPVTELRRHGHLEIRGAGFRYPGAEEPVLKGVELVALPGETTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVDGVAVA
EVDPVLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVSKLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVATIRDADRIIVLDEGRVVGTGTHRELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=661972 OG289_RS17115 WP_327314890.1 3883909..3885642(+) (rcrP) [Streptomyces sp. NBC_01235]
GTGCTCATACGACTACTGAGGACCTACCTCAGGCCCTACCGAAAACCCATCACCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACACTCAACGCCCACATCATCGACAAGGGCGTCGTCGAGGGCGACACCGGCTACA
TCCTGTCCTTCGGCGGCGTGATGATCGGCATCTCGCTCGCACAGGTCGTGTGCAACATCGGCGCGGTGTACTACGGCGCC
AGGACCGCCGCCGCGCTCGGCCGGGACGTGCGGGCGGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGATCGG
CCACTTCGGCGCGCCCACGCTGATCACCCGGACGACGAACGACGTCCAGCAGATCCAGATGCTGACCCTGATGACGTTCA
CGCTGTTGGTGTCGGCCCCCATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGCCTGGACGTGCCGTTGTCCGGGGTG
CTGGTCGCCGTGGTGCCGACCCTGGGCATCTGCGTGACGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGGTCCATGCA
GGTGAAGTTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCAGCGGCAACCGGGTCATCCGGGCCTTCGTCCGGGACG
AGTACGAGCAGCAGCGGTTCCGGAAGGCCAACGCCGACCTCACGGACATCTCGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCGGTGGTCTGGTTCGGGGCCCACCGCATCGACAGCGG
CGGCATGCAGATCGGTGATCTGACCGCCTTCCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCTCTTCGTCGGTCGTGCCG
CCGATGGCACCTGTCACCGAGCTGCGCCGGCACGGGCATCTGGAGATCCGGGGCGCGGGCTTCCGCTATCCCGGCGCCGA
GGAGCCCGTCCTCAAGGGCGTCGAGCTGGTGGCGCTGCCCGGTGAGACGACCGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTGCTCGGGCTGGTGCCCCGGCTGTTCGACGCGACCGAGGGCGAGGTGCTCGTCGACGGGGTGGCCGTCGCC
GAGGTCGACCCGGTGCTGCTGGCGAAGACCGTCGGACTCGTGCCGCAGAAGCCGTACCTGTTCGCGGGCACGGTCGCCAC
CAACCTGCGCTACGGCAATCCGGACGCCACGGACGAGGAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGAGCAAGCTGGAGAACGGGCTGGACTCCCCCATCGCGCAGGGCGGCACGAACGTCTCCGGTGGTCAGCGGCAGCGGCTC
GCGATCGCCCGTACGCTCGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCGGCACTGCGGGCGGCGCTCGGGCGGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GCGACGCCGACCGGATCATCGTCCTCGACGAGGGCCGGGTCGTCGGCACGGGCACGCACCGCGAGCTCATGGCGGACAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.432

97.574

0.385