Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MMZ59_RS07855 Genome accession   NZ_CP093150
Coordinates   1555570..1556349 (+) Length   259 a.a.
NCBI ID   WP_041108981.1    Uniprot ID   -
Organism   Bacillus altitudinis strain JYY-02     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1550570..1561349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ59_RS07835 (MMZ59_07835) trmFO 1551274..1552578 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MMZ59_RS07840 (MMZ59_07840) xerC 1552641..1553558 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  MMZ59_RS07845 (MMZ59_07845) hslV 1553573..1554118 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  MMZ59_RS07850 (MMZ59_07850) hslU 1554135..1555535 (+) 1401 WP_241511896.1 HslU--HslV peptidase ATPase subunit -
  MMZ59_RS07855 (MMZ59_07855) codY 1555570..1556349 (+) 780 WP_041108981.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MMZ59_RS07860 (MMZ59_07860) flgB 1556638..1557027 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  MMZ59_RS07865 (MMZ59_07865) flgC 1557027..1557479 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  MMZ59_RS07870 (MMZ59_07870) fliE 1557491..1557808 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  MMZ59_RS07875 (MMZ59_07875) fliF 1557859..1559451 (+) 1593 WP_007499608.1 flagellar basal-body MS-ring/collar protein FliF -
  MMZ59_RS07880 (MMZ59_07880) fliG 1559463..1560479 (+) 1017 WP_017367244.1 flagellar motor switch protein FliG -
  MMZ59_RS07885 (MMZ59_07885) fliH 1560472..1561236 (+) 765 WP_048002828.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29003.26 Da        Isoelectric Point: 4.7176

>NTDB_id=661942 MMZ59_RS07855 WP_041108981.1 1555570..1556349(+) (codY) [Bacillus altitudinis strain JYY-02]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=661942 MMZ59_RS07855 WP_041108981.1 1555570..1556349(+) (codY) [Bacillus altitudinis strain JYY-02]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCTATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCCGGTTTGACAACGATTGTGCCAATTATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGTTCTCTTTCATATAGTGAGCTTGAGGCGAT
TGAGCATATCTTTGAAGAACTTGATGGCAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.638

98.069

0.467