Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG251_RS28955 Genome accession   NZ_CP108508
Coordinates   6483326..6484357 (+) Length   343 a.a.
NCBI ID   WP_326679874.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01237     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 6478326..6489357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG251_RS28935 (OG251_28950) - 6478603..6480279 (+) 1677 WP_326679870.1 ABC transporter substrate-binding protein -
  OG251_RS28940 (OG251_28955) - 6480299..6481354 (+) 1056 WP_326679871.1 ABC transporter ATP-binding protein -
  OG251_RS28945 (OG251_28960) - 6481351..6482331 (+) 981 WP_326679872.1 ABC transporter permease -
  OG251_RS28950 (OG251_28965) - 6482337..6483329 (+) 993 WP_326679873.1 ABC transporter permease -
  OG251_RS28955 (OG251_28970) amiE 6483326..6484357 (+) 1032 WP_326679874.1 ABC transporter ATP-binding protein Regulator
  OG251_RS28960 (OG251_28975) - 6484380..6485801 (+) 1422 WP_326679875.1 GH1 family beta-glucosidase -
  OG251_RS28965 (OG251_28980) - 6485822..6487696 (+) 1875 WP_326679876.1 discoidin domain-containing protein -
  OG251_RS28970 (OG251_28985) - 6487853..6489220 (+) 1368 WP_326679877.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37241.81 Da        Isoelectric Point: 7.0390

>NTDB_id=661841 OG251_RS28955 WP_326679874.1 6483326..6484357(+) (amiE) [Streptomyces sp. NBC_01237]
MTAEPVLTISGLNVDYGTGRDAVHALRDIDLTLHRGEVLGLAGESGSGKSTLAYAVTRLLSPPGVITGGDVRYHRPGGDS
IDILSLPPEKLRAFRWQELSIVFQGAMNSLNPVHTVHSQLTDVLKAHRPELRAAQRTARAAELLTLVGISADRLAAYPHQ
LSGGMRQRVMIAMALALEPEIVIMDEPTTALDVVMQRQILRRLVQLREQLNFSVVFITHDISLLIEFSDRIAIMYGGRIV
EEAGAAEIYRDPRHPYSDGLLHSFPALHGPRRELTGIPGSPPHLSAMPTGCAFHPRCGKAFEPCDERVPVLTPPAGEPGR
AVACWLHAQDPRAPHPSASTPAV

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=661841 OG251_RS28955 WP_326679874.1 6483326..6484357(+) (amiE) [Streptomyces sp. NBC_01237]
ATGACGGCCGAGCCGGTCCTCACCATCAGCGGACTCAACGTCGACTACGGCACCGGCCGCGACGCCGTCCACGCCCTGCG
CGACATCGACCTCACCCTGCACCGGGGCGAAGTCCTGGGCCTGGCGGGCGAGTCGGGCTCCGGCAAGTCCACCCTCGCCT
ACGCCGTCACCCGGCTGCTCTCCCCGCCCGGAGTGATCACCGGCGGCGACGTCCGGTACCACCGGCCGGGCGGGGACAGC
ATCGACATCCTCTCCCTGCCCCCGGAGAAGCTGCGCGCCTTCCGCTGGCAGGAGCTGTCCATCGTGTTCCAGGGCGCGAT
GAACTCGCTCAACCCGGTCCACACCGTCCACAGCCAGCTCACCGACGTACTCAAGGCCCACCGCCCCGAACTGCGCGCCG
CCCAAAGAACCGCCCGCGCGGCGGAGTTGCTGACGCTCGTCGGGATCTCCGCGGACCGGCTCGCCGCCTATCCGCACCAG
CTGTCCGGCGGCATGCGCCAGCGCGTGATGATCGCGATGGCGCTGGCGCTGGAACCCGAGATCGTCATCATGGACGAGCC
GACCACCGCACTCGACGTCGTCATGCAGCGGCAGATCCTGCGCCGGCTGGTCCAGCTGCGGGAGCAGCTCAACTTCTCGG
TCGTGTTCATCACCCATGACATCTCGCTCCTGATCGAGTTCTCGGACCGGATCGCGATCATGTACGGGGGCCGGATCGTG
GAGGAGGCGGGCGCGGCCGAGATCTACCGCGACCCGCGCCACCCCTACAGCGACGGGCTGCTCCACTCGTTCCCCGCGCT
GCACGGCCCGCGCCGCGAGCTGACCGGCATCCCCGGCTCACCCCCGCACCTGTCCGCGATGCCCACGGGCTGCGCCTTCC
ACCCCCGCTGCGGCAAGGCGTTCGAGCCGTGCGACGAGCGGGTCCCGGTGCTGACCCCGCCCGCGGGCGAACCGGGCCGC
GCGGTCGCCTGCTGGCTGCACGCACAGGACCCGCGAGCCCCGCACCCGTCCGCGTCCACCCCGGCCGTCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-188)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(240-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

37.612

97.668

0.367
  amiE Streptococcus thermophilus LMD-9

37.612

97.668

0.367
  amiE Streptococcus salivarius strain HSISS4

37.202

97.959

0.364