Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MM522_RS09895 Genome accession   NZ_CP093067
Coordinates   1952218..1952553 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain ATC-3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1947218..1957553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM522_RS09875 (MM522_09875) gcvT 1947810..1948898 (-) 1089 WP_015251720.1 glycine cleavage system aminomethyltransferase GcvT -
  MM522_RS09880 (MM522_09880) yqhH 1949340..1951013 (+) 1674 WP_004398544.1 SNF2-related protein -
  MM522_RS09885 (MM522_09885) yqhG 1951034..1951828 (+) 795 WP_003230200.1 YqhG family protein -
  MM522_RS09890 (MM522_09890) sinI 1952011..1952184 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  MM522_RS09895 (MM522_09895) sinR 1952218..1952553 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  MM522_RS09900 (MM522_09900) tasA 1952646..1953431 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  MM522_RS09905 (MM522_09905) sipW 1953495..1954067 (-) 573 WP_003246088.1 signal peptidase I -
  MM522_RS09910 (MM522_09910) tapA 1954051..1954812 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  MM522_RS09915 (MM522_09915) yqzG 1955084..1955410 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MM522_RS09920 (MM522_09920) spoIIT 1955452..1955631 (-) 180 WP_003230176.1 YqzE family protein -
  MM522_RS09925 (MM522_09925) comGG 1955702..1956076 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  MM522_RS09930 (MM522_09930) comGF 1956077..1956460 (-) 384 WP_015251713.1 ComG operon protein ComGF Machinery gene
  MM522_RS09935 (MM522_09935) comGE 1956486..1956833 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  MM522_RS09940 (MM522_09940) comGD 1956817..1957248 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  MM522_RS09945 (MM522_09945) comGC 1957238..1957534 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=661841 MM522_RS09895 WP_003226345.1 1952218..1952553(+) (sinR) [Bacillus subtilis strain ATC-3]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=661841 MM522_RS09895 WP_003226345.1 1952218..1952553(+) (sinR) [Bacillus subtilis strain ATC-3]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1