Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG466_RS27545 Genome accession   NZ_CP108497
Coordinates   6043527..6045260 (-) Length   577 a.a.
NCBI ID   WP_266746081.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01240     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6038527..6050260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG466_RS27535 (OG466_27565) - 6040434..6041528 (+) 1095 WP_266746083.1 RNA polymerase sigma factor -
  OG466_RS27540 (OG466_27570) rcrQ 6041596..6043527 (-) 1932 WP_327259322.1 ABC transporter ATP-binding protein Regulator
  OG466_RS27545 (OG466_27575) rcrP 6043527..6045260 (-) 1734 WP_266746081.1 ABC transporter ATP-binding protein Regulator
  OG466_RS27550 (OG466_27580) - 6045430..6046875 (-) 1446 WP_266746080.1 FGGY family carbohydrate kinase -
  OG466_RS27555 (OG466_27585) - 6046948..6047256 (-) 309 WP_266746079.1 YtxH domain-containing protein -
  OG466_RS27575 (OG466_27605) - 6048579..6049151 (-) 573 WP_266746078.1 rhodanese-like domain-containing protein -
  OG466_RS27580 (OG466_27610) - 6049233..6049511 (+) 279 WP_266746077.1 metal-sensitive transcriptional regulator -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62737.93 Da        Isoelectric Point: 5.3934

>NTDB_id=661765 OG466_RS27545 WP_266746081.1 6043527..6045260(-) (rcrP) [Streptomyces sp. NBC_01240]
MLIKLLRAYLGPYKKPILLLVLLQLLQTCASLYLPTLNADIIDSGVVKGDTGYILEFGGIMIAVSIGQVVCNMGAVFYGA
RTASALGRDVRASIFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQERVDTVNRVLREQITGNRVIRAFVRDRYEEERFRGANNELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVIP
PVKPVRELLAHGHLEVRGADFRYPGAEEPVLRSVNLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPTLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEALEHGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALAQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=661765 OG466_RS27545 WP_266746081.1 6043527..6045260(-) (rcrP) [Streptomyces sp. NBC_01240]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGTCCGTACAAGAAACCCATCCTGCTGCTGGTCCTTCTCCAACTCCTGCA
GACCTGCGCCAGCCTGTATCTGCCCACCCTGAACGCCGACATCATCGACAGCGGTGTCGTCAAGGGGGACACGGGCTACA
TCCTGGAGTTCGGCGGCATCATGATCGCCGTCAGCATCGGCCAGGTGGTCTGCAACATGGGGGCCGTCTTCTACGGCGCC
CGCACCGCGTCCGCCCTCGGCCGTGATGTCCGGGCGTCGATCTTCGACCGGGTGCAGTCGTTCTCCGCACGTGAGGTCGG
GCGGTTCGGCGCGCCCTCGCTGATCACGCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACGTTCA
CCCTGATGGTTTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGCCTGATCGTCAAGCGGATGCGGCCGCTGTTTCGCACCATGCA
GGAGCGGGTCGACACCGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACCGTGTCATCCGCGCCTTCGTCCGTGACC
GTTACGAGGAGGAGCGCTTCCGCGGTGCCAACAACGAGCTGACCGATGTGGCGCTGTCCACGGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCCTCGATCGCCGTGGTCTGGTTCGGTGCCCACCGCATCGACAGCGG
CGGCATGGAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCGAGCGTGATTCCG
CCCGTCAAGCCGGTGCGCGAGCTGCTCGCCCACGGTCATCTGGAGGTCCGCGGGGCGGACTTCCGCTATCCGGGCGCCGA
GGAGCCGGTGCTGCGGTCGGTGAATCTGGTGGCCCGCCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCACGGCTGTTCGACGTGACGGACGGCCAGGTGCTGGTCGACGGCACGGACGTACGG
ACGCTGGAGCCGACGCTGCTGGCGAAGACCGTGAGCCTCGTGCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGGAACCCGGACGCCACCGACGAGGAGCTCTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGCGCTGGAGCACGGCCTGAACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGGCTG
GCGATCGCCAGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACCGA
TGCCGCGCTGCGCGGGGCACTCGCGCAGGAGACGGCCGAGGCGACCGTGGTGATCGTGGCGCAACGGGTGTCCACCATCC
GCGACGCCGACCGGATCCTGGTACTGGACGAGGGCCGGGTCGTCGGCTCCGGTACCCATCACGAACTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCGGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.652

100

0.411