Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG357_RS26920 Genome accession   NZ_CP108474
Coordinates   5946779..5948512 (-) Length   577 a.a.
NCBI ID   WP_329623601.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01255     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5941779..5953512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG357_RS26905 (OG357_26910) rpoS 5943070..5944020 (+) 951 WP_329625706.1 RNA polymerase sigma factor Regulator
  OG357_RS26910 (OG357_26915) - 5944017..5944787 (-) 771 WP_329623599.1 hypothetical protein -
  OG357_RS26915 (OG357_26920) rcrQ 5944836..5946779 (-) 1944 WP_329623600.1 ABC transporter ATP-binding protein Regulator
  OG357_RS26920 (OG357_26925) rcrP 5946779..5948512 (-) 1734 WP_329623601.1 ABC transporter ATP-binding protein Regulator
  OG357_RS26925 (OG357_26930) - 5948614..5950053 (-) 1440 WP_329623602.1 FGGY family carbohydrate kinase -
  OG357_RS26930 (OG357_26935) - 5950093..5950404 (-) 312 WP_329623603.1 YtxH domain-containing protein -
  OG357_RS26950 (OG357_26955) - 5951597..5952100 (-) 504 WP_329623604.1 hypothetical protein -
  OG357_RS26955 (OG357_26960) - 5952619..5952748 (-) 130 Protein_5315 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62974.14 Da        Isoelectric Point: 5.7996

>NTDB_id=661444 OG357_RS26920 WP_329623601.1 5946779..5948512(-) (rcrP) [Streptomyces sp. NBC_01255]
MLIRLLRTHLRPYRKPIALLVLLQFLQTCASLYLPTLNADIIDNGVVNGDTGYILRFGALMVGVSVVQVVCNIGAVYYGA
RTASALGRDVRGAIFDRVQSFSARELGHFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIVMALGQDVPLSAV
LLAVVPVLGVSVTLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVKDGYEEERFRRANADLTDVSMSTGRLMAL
MFPVVMTVVNVSSVAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLATESSVVP
PAEPVTTLDRRGHLEVRSADFRYPGAEESVLKDIGLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATGGEVLVDGVDVR
KLDPALMARTVSLVPQKPYLFSGTVATNLRYGKPDATDEELWHALEVAQAADFVRKLENGLNAPIAQGGTNVSGGQRQRL
AIARTLVQKPEIYLFDDSFSALDYETDALLREALRQETADSTVVIVAQRVATIRDADRIVVLDEGRVVGTGRHQELMAEN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=661444 OG357_RS26920 WP_329623601.1 5946779..5948512(-) (rcrP) [Streptomyces sp. NBC_01255]
GTGCTCATAAGACTTCTCCGAACCCACCTGCGGCCCTACCGAAAACCCATCGCGCTCCTCGTCCTGCTCCAGTTCCTGCA
GACCTGCGCGAGCCTCTACCTGCCGACCCTGAACGCCGACATCATCGACAACGGTGTCGTCAACGGGGACACCGGCTACA
TCCTGCGTTTCGGCGCGCTGATGGTCGGCGTCTCCGTCGTGCAGGTCGTCTGCAACATCGGGGCCGTGTACTACGGCGCT
CGGACGGCGTCCGCGCTCGGCCGGGACGTGCGCGGCGCGATCTTCGACCGCGTGCAGTCGTTCTCCGCGCGGGAGCTCGG
GCACTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGTCCTGATGGCGTTCA
CCCTGATGGTCTCCGCGCCGATCATGTGTGTCGGCGGCATCGTGATGGCGCTCGGCCAGGACGTGCCGCTGTCGGCCGTT
CTGCTCGCGGTCGTGCCGGTCCTCGGTGTCTCCGTCACCCTCATCGTGCGGAGGATGCGGCCGCTCTTCCGGACCATGCA
GGAGCGCCTCGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGGGCCTTCGTGAAGGACG
GGTACGAGGAGGAGCGGTTCCGCCGGGCCAACGCCGATCTGACCGACGTGTCGATGTCGACCGGCCGGCTGATGGCGCTG
ATGTTCCCGGTCGTGATGACCGTCGTGAACGTCTCCAGCGTGGCCGTCGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCCTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGCGACCGAGTCCAGCGTCGTACCG
CCGGCCGAGCCGGTGACGACCCTCGACCGGCGCGGGCACCTGGAGGTCAGGAGCGCGGACTTCCGGTACCCGGGCGCCGA
GGAATCGGTCCTGAAGGACATCGGGCTCGTCGCCCGGCCCGGGGAGACCACCGCGATCATCGGTTCCACCGGCAGCGGCA
AGTCGACGCTCCTCGGGCTCGTCCCGCGGCTCTTCGACGCGACCGGCGGCGAGGTCCTCGTCGACGGCGTCGACGTGCGG
AAGCTCGACCCCGCGCTGATGGCGCGGACCGTGAGCCTGGTGCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTGGCGAC
GAACCTGCGGTACGGGAAGCCCGACGCGACCGACGAGGAGCTCTGGCACGCGCTGGAGGTCGCCCAGGCCGCCGACTTCG
TCCGCAAGCTCGAGAACGGTCTCAACGCCCCGATCGCGCAGGGCGGCACGAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGAAGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTGGACTACGAGACCGA
CGCGCTGCTGCGCGAGGCGCTCCGGCAGGAGACGGCGGACTCGACGGTGGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTCGTCGGCACGGGCCGGCACCAGGAGCTGATGGCGGAGAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.286

97.054

0.381