Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG322_RS26050 Genome accession   NZ_CP108464
Coordinates   5873433..5875166 (-) Length   577 a.a.
NCBI ID   WP_124283961.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01260     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5868433..5880166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG322_RS26040 (OG322_26090) - 5870312..5871457 (+) 1146 WP_124283962.1 RNA polymerase sigma factor -
  OG322_RS26045 (OG322_26095) rcrQ 5871502..5873433 (-) 1932 WP_123470789.1 ABC transporter ATP-binding protein Regulator
  OG322_RS26050 (OG322_26100) rcrP 5873433..5875166 (-) 1734 WP_124283961.1 ABC transporter ATP-binding protein Regulator
  OG322_RS26055 (OG322_26105) - 5875364..5876809 (-) 1446 WP_329307002.1 FGGY family carbohydrate kinase -
  OG322_RS26060 (OG322_26110) - 5876877..5877176 (-) 300 WP_123470782.1 YtxH domain-containing protein -
  OG322_RS26080 (OG322_26130) - 5878150..5878986 (-) 837 WP_329307003.1 hypothetical protein -
  OG322_RS26085 (OG322_26135) - 5879174..5879575 (-) 402 WP_329307818.1 hypothetical protein -
  OG322_RS26090 (OG322_26140) - 5879545..5879925 (+) 381 WP_329307004.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62541.49 Da        Isoelectric Point: 5.3623

>NTDB_id=661208 OG322_RS26050 WP_124283961.1 5873433..5875166(-) (rcrP) [Streptomyces sp. NBC_01260]
MLIKLLRAYLGPYKKPIALLVVFQLLQTSAALYLPTLNADIIDHGVVKGDTDYILQYGGAMIVVSIAQVVCNIGAVYIGA
RTASALGRDVRASVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVDPVTELRAHGHLEVRGADFRYPGAEASVLRSVNLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLDPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEGLEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQQPEIYLFDDSFSALDYTTDAALRAALLRETAAATVVIVAQRVSTIRDADRILVMDEGRVVGSGSHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=661208 OG322_RS26050 WP_124283961.1 5873433..5875166(-) (rcrP) [Streptomyces sp. NBC_01260]
GTGCTCATAAAACTCCTGCGGGCCTACCTCGGTCCGTACAAGAAGCCGATCGCGCTGCTGGTGGTCTTCCAGCTGCTCCA
GACCTCCGCCGCCCTCTATCTGCCCACCCTGAACGCCGACATCATCGACCACGGTGTCGTCAAGGGGGACACGGACTACA
TCCTTCAGTACGGCGGCGCCATGATCGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGTGCC
CGTACCGCGTCCGCCCTCGGCCGCGATGTCCGGGCATCGGTCTTCGACCGGGTCCAGTCGTTCTCCGCGCGCGAGCTCGG
CCGGTTCGGCGCCCCTTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTCTCGGCACCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTG
CTCCTCGCGGTGGTGCCGGTCCTCGGGATCGCGGTGAGTCTGATCGTGAAGCGGATGCGTCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
GCTACGAGGAGGAGCGCTTTCGCGGTGCCAACACCGAGCTGACGGACGTGGCACTGTCCACCGGCCGGCTGATGGCACTG
ATGTTCCCGACCGTGATGACCGTCGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGCGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGGGCGCTGACCGCGTTCCTCTCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGAGACCGATTCCAGCGTGGTGCCG
CCGGTCGATCCGGTGACCGAACTGCGCGCCCACGGGCACCTGGAGGTCCGCGGTGCGGACTTCCGCTACCCCGGTGCCGA
GGCGTCGGTGCTGCGGTCGGTGAATCTGGTGGCCCGGCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGCCTCGTACCCCGGCTGTTCGATGTGACGGACGGCCAGGTGCTGGTCGACGGGACGGACGTACGG
ACACTGGATCCGGCGCTGCTGGCCAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTATCTGTTCTCCGGAACGGTCGCGAC
CAATCTGCGGTACGGGAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCCCAGGCCAAGGAGTTCG
TCGAGGGTCTGGAGCACGGTCTCGACGCACCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGAGGCAGCGCCTG
TCGATCGCCCGGACGCTGGTCCAGCAGCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTGGACTACACCACGGA
CGCCGCGCTGCGCGCCGCGCTGCTGCGGGAGACCGCCGCCGCGACCGTGGTGATCGTCGCACAGCGGGTGTCCACCATCC
GCGACGCCGACCGGATCCTGGTGATGGACGAGGGCCGGGTCGTCGGCTCCGGCAGTCATCACGAGCTGATGGACGGCAAT
GAAACCTACCGGGAGATCGTGCTCTCCCAACTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.516

94.107

0.381