Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG757_RS39115 Genome accession   NZ_CP108462
Coordinates   8470592..8471563 (+) Length   323 a.a.
NCBI ID   WP_329320223.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01262     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8465592..8476563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG757_RS39100 (OG757_39070) - 8466331..8467191 (+) 861 WP_329320219.1 carbohydrate ABC transporter permease -
  OG757_RS39105 (OG757_39075) - 8467217..8467762 (+) 546 WP_329320220.1 hypothetical protein -
  OG757_RS39110 (OG757_39080) - 8467827..8470571 (+) 2745 WP_329320222.1 Tat pathway signal sequence domain protein -
  OG757_RS39115 (OG757_39085) cytR 8470592..8471563 (+) 972 WP_329320223.1 LacI family DNA-binding transcriptional regulator Regulator
  OG757_RS39120 (OG757_39090) - 8472091..8474436 (-) 2346 WP_329320225.1 hypothetical protein -
  OG757_RS39125 (OG757_39095) - 8474527..8475012 (+) 486 WP_329320226.1 SRPBCC family protein -
  OG757_RS39135 (OG757_39105) - 8475184..8475930 (-) 747 WP_329320227.1 exonuclease domain-containing protein -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 34032.26 Da        Isoelectric Point: 8.9569

>NTDB_id=661040 OG757_RS39115 WP_329320223.1 8470592..8471563(+) (cytR) [Streptomyces sp. NBC_01262]
MKDVAHLAGVSVGTVSNVLNRPERVAPATRSRVLAAIERLGYVRSESARQLRAGRSRMLALLVLDLANPFFVAVAKGASA
AAREAGLGVMVCHSAQSAAEEAEYVGMFAEHRVRGVLVTPVDATGHSLAPLRRQGIPYVCVDRLAGPGEAACSVSVDDHA
GAALAVGHLVARGHRRVAYVNGPLHLTQCRDRLTGALSVAPHLHVLDVPRLDVAAGRDAGARLLGLTPRPTAVFCANDLI
ALGVLQTLHTAGLRVPDDLALVGYDDIEFAAAAAVPLTSVRQPAFLMGRRAVRLLLSEADPGHVHERVVLPPELTIRRSS
SPD

Nucleotide


Download         Length: 972 bp        

>NTDB_id=661040 OG757_RS39115 WP_329320223.1 8470592..8471563(+) (cytR) [Streptomyces sp. NBC_01262]
ATGAAGGACGTCGCCCACCTCGCGGGCGTGTCCGTGGGAACCGTGTCCAACGTGCTCAACCGGCCCGAGCGCGTGGCCCC
CGCCACGCGCTCCCGGGTCCTGGCCGCGATCGAGCGGCTCGGCTACGTACGGAGCGAATCGGCCCGGCAACTGCGGGCCG
GGCGCAGCCGCATGCTCGCGCTGCTCGTGCTCGACCTGGCCAACCCCTTCTTCGTCGCCGTCGCCAAGGGCGCCTCGGCG
GCGGCGAGGGAGGCGGGGCTCGGCGTCATGGTCTGCCACAGCGCGCAGAGCGCGGCGGAGGAGGCCGAGTACGTGGGCAT
GTTCGCCGAACACCGCGTCCGGGGCGTCCTGGTGACCCCGGTCGACGCGACCGGGCACAGCCTCGCCCCGCTGCGGCGCC
AGGGCATTCCCTATGTCTGCGTCGACCGCCTCGCCGGCCCCGGCGAGGCCGCCTGCTCCGTCTCCGTCGACGACCACGCC
GGCGCGGCGCTCGCCGTCGGCCACCTCGTGGCCCGTGGCCACCGACGCGTCGCCTACGTCAACGGCCCCCTGCACCTGAC
CCAGTGCCGCGACCGCCTCACCGGCGCCCTGTCCGTCGCCCCGCACCTCCACGTCCTCGACGTCCCCCGCCTCGACGTCG
CCGCCGGCCGCGACGCCGGCGCCCGCCTCCTCGGGCTCACGCCCCGCCCCACCGCCGTCTTCTGCGCCAACGACCTCATC
GCCCTCGGCGTCCTCCAGACCCTCCACACCGCCGGCCTCCGCGTCCCCGACGACCTCGCCCTCGTCGGCTACGACGACAT
CGAGTTCGCCGCCGCGGCAGCCGTTCCCCTGACGTCGGTCCGTCAACCCGCCTTCCTGATGGGCCGCCGCGCCGTCCGCC
TCCTCCTGTCGGAGGCCGACCCCGGCCATGTCCACGAGCGCGTCGTCCTCCCGCCCGAGCTCACGATCCGCCGCAGCAGC
AGCCCCGACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(1-44)

Periplasmic binding protein-like domain (Peripla_BP_3)

(166-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

35.241

100

0.362