Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG757_RS31000 Genome accession   NZ_CP108462
Coordinates   6730421..6732154 (-) Length   577 a.a.
NCBI ID   WP_329317886.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01262     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6725421..6737154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG757_RS30980 (OG757_30945) - 6725904..6726560 (+) 657 WP_329317881.1 TetR family transcriptional regulator -
  OG757_RS30985 (OG757_30950) - 6726674..6727909 (+) 1236 WP_329322239.1 RNA polymerase sigma factor -
  OG757_RS30990 (OG757_30955) - 6727937..6728434 (+) 498 WP_329317883.1 hypothetical protein -
  OG757_RS30995 (OG757_30960) rcrQ 6728466..6730373 (-) 1908 WP_329322241.1 ABC transporter ATP-binding protein Regulator
  OG757_RS31000 (OG757_30965) rcrP 6730421..6732154 (-) 1734 WP_329317886.1 ABC transporter ATP-binding protein Regulator
  OG757_RS31005 (OG757_30970) - 6732224..6733675 (-) 1452 WP_329317887.1 FGGY family carbohydrate kinase -
  OG757_RS31010 (OG757_30975) - 6733759..6734058 (-) 300 WP_329317888.1 YtxH domain-containing protein -
  OG757_RS31030 (OG757_30995) - 6734810..6736702 (-) 1893 WP_329317890.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62776.23 Da        Isoelectric Point: 7.1099

>NTDB_id=661027 OG757_RS31000 WP_329317886.1 6730421..6732154(-) (rcrP) [Streptomyces sp. NBC_01262]
MLIRLLRSHLRPYKQPITVLVLLQLVQTIAQLYLPTLNADIIDSGVVKGDTGYIMRVGGVMIAVTVLQVVCAIGAVYYGA
RTAMAVGRDIRASVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSSL
LLGVVPVLGVIVTLLVRRLRPLFRTMQERLDTVNQVVREQITGIRVIRAFVKDDYERERFGRANAELTYYSLRTGQLMAL
MFPLVFAVVNMSSVAVMWFGAQRIDSGGMQIGALTAFLSYLMQILMAVMMATFMFMMVPRAEVCAERIEEVLGTESSVVP
PASPVRKLLRHGHLELRGADFAYPGAEAKVLHGVDLVARPGQVTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGVNVR
ELDPALMARTVALVPQRPYLFTGTVASNLRYGKPDATDEELWHALEVAQAKGFVEQLEGGLDAPIAQGGTNVSGGQRQRL
AIARALVRQPEIYLFDDSFSALDYATDAALRRALGRETSEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGTHHELMAGN
DTYREIVLSQLTEQEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=661027 OG757_RS31000 WP_329317886.1 6730421..6732154(-) (rcrP) [Streptomyces sp. NBC_01262]
GTGCTGATCCGACTCCTCCGCTCCCACCTCCGCCCGTACAAGCAACCCATCACCGTGCTCGTCCTGCTCCAGCTCGTGCA
GACGATCGCCCAGCTCTACCTGCCCACCCTCAACGCCGACATCATCGACAGCGGTGTCGTGAAGGGGGACACGGGCTACA
TCATGAGGGTCGGCGGCGTCATGATCGCGGTCACCGTCCTTCAGGTGGTCTGCGCGATAGGCGCGGTCTACTACGGCGCC
CGGACCGCGATGGCGGTCGGCCGCGACATCCGGGCCTCGGTCTTCGACCGGGTGCAGAGCTTCTCGGCCCGCGAGGTGGG
CCAGTTCGGGGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTGCAGATGCTGGTGCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTGCCGCTGTCCTCGCTG
CTGCTGGGCGTGGTGCCGGTGCTCGGCGTCATCGTGACGCTGCTGGTGCGGCGGCTGCGGCCGCTGTTCCGGACGATGCA
GGAGCGGCTGGACACCGTGAACCAGGTGGTGCGGGAGCAGATCACCGGCATCCGGGTGATCCGGGCCTTCGTCAAGGACG
ACTACGAGCGCGAGCGCTTCGGGCGGGCCAATGCGGAGCTGACGTATTACTCGCTGCGCACCGGGCAGCTGATGGCGCTG
ATGTTCCCGCTGGTGTTCGCGGTGGTGAACATGTCGAGCGTGGCGGTGATGTGGTTCGGCGCGCAGCGGATCGACAGCGG
CGGGATGCAGATAGGCGCGCTGACGGCGTTCCTGAGCTATCTGATGCAGATCCTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCGAGGAGGTGCTCGGCACCGAGTCCAGCGTCGTGCCG
CCCGCCTCGCCGGTGCGCAAGCTGCTCCGGCACGGCCATCTGGAGCTGCGCGGGGCCGACTTCGCGTATCCCGGGGCCGA
GGCGAAGGTGCTGCACGGGGTGGATCTGGTCGCCCGGCCGGGGCAGGTCACCGCGGTGATCGGGTCGACCGGCAGTGGCA
AGAGCACCCTGCTGGGCCTGGTGCCCCGGCTCTTCGACGCCACCGGCGGCGAGGTGCTGGTGGACGGCGTGAACGTGCGG
GAGCTGGACCCGGCGCTGATGGCCCGGACGGTGGCTCTCGTACCGCAGCGGCCGTATCTGTTCACCGGGACGGTGGCCTC
CAACCTGCGCTACGGCAAGCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAACAGCTGGAGGGCGGGCTGGACGCGCCGATCGCGCAGGGCGGCACCAATGTGTCGGGCGGGCAGCGGCAGCGGCTG
GCGATCGCGCGGGCGCTGGTGCGGCAGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTGGACTACGCGACCGA
CGCCGCGCTGCGGCGCGCGCTCGGCCGGGAGACGTCCGAGGCGACCGTGGTGATCGTGGCCCAGCGGGTCAGCACCATCC
GTGACGCCGACCGCATCGTGGTCCTCGACGAGGGGCGCGTCGTCGGGACCGGCACCCATCACGAGCTGATGGCCGGCAAC
GACACCTATCGGGAGATCGTGCTCTCCCAGCTCACCGAGCAGGAGGCGGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.984

95.147

0.39