Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG564_RS30280 Genome accession   NZ_CP108438
Coordinates   6743737..6745662 (-) Length   641 a.a.
NCBI ID   WP_266670298.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01280     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6738737..6750662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG564_RS30265 (OG564_30265) - 6738839..6740113 (+) 1275 WP_329435339.1 FAD-dependent oxidoreductase -
  OG564_RS30270 (OG564_30270) dnaG 6740148..6742046 (+) 1899 WP_266670302.1 DNA primase -
  OG564_RS30275 (OG564_30275) - 6742210..6743595 (+) 1386 WP_329435340.1 sigma-70 family RNA polymerase sigma factor -
  OG564_RS30280 (OG564_30280) rcrQ 6743737..6745662 (-) 1926 WP_266670298.1 ABC transporter ATP-binding protein Regulator
  OG564_RS30285 (OG564_30285) rcrP 6745662..6747395 (-) 1734 WP_266676323.1 ABC transporter ATP-binding protein Regulator
  OG564_RS30290 (OG564_30290) - 6747531..6748970 (-) 1440 WP_329435342.1 FGGY family carbohydrate kinase -
  OG564_RS30295 (OG564_30295) - 6749056..6749364 (-) 309 WP_266670294.1 YtxH domain-containing protein -
  OG564_RS30315 (OG564_30315) - 6750380..6750616 (+) 237 WP_329435343.1 hypothetical protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69184.59 Da        Isoelectric Point: 5.2050

>NTDB_id=660606 OG564_RS30280 WP_266670298.1 6743737..6745662(-) (rcrQ) [Streptomyces sp. NBC_01280]
MAGPGGRMMAGGPDQRSMDFKGSGKRLIRQFKPEKTTMYAMVACVVLSVGLSVLGPKILGRATDLVFAGIIGRQMPAGSS
KAQVIEAMRAKGDSGVADMLSGIDFTPGQGIDFGAVGSVLGLALCTFLGAGLLMAVATRLSNLALNKTVFRMREDIQAKL
SRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQTMGQLINSLLTIIGVLVMMFWISPLLALVALVTVPLSFLIATRVGKR
SQPQFVQQWKTTGKLNAHIEEMYTGHNLVKVFGRQEESAKAFAEQNDALYEAGFKAQFNSGMMQPLMFFVSNLNYVLVAV
VGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEADPVPGEKPDLLRGLVEFEN
VSFRYEQDKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLLRFYEVTGGRITLDGVDVAKMSRDELRSGIGMVLQDTW
LFGGTIADNIAYGAAKDVTREQIEEAARAAHADRFIRTLPEGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADTILVMESGDIVEQGTHDALRAAGGAYERLYEAQFAQAVAEV
E

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=660606 OG564_RS30280 WP_266670298.1 6743737..6745662(-) (rcrQ) [Streptomyces sp. NBC_01280]
ATGGCGGGGCCAGGCGGGCGGATGATGGCCGGGGGCCCCGACCAGCGTTCGATGGACTTCAAGGGCTCGGGCAAGCGGCT
CATCAGGCAGTTCAAGCCCGAGAAGACGACGATGTACGCGATGGTCGCGTGTGTCGTCCTGAGTGTGGGCCTGTCGGTGC
TGGGCCCGAAGATCCTGGGCCGGGCGACCGACCTGGTCTTCGCGGGCATCATCGGGCGTCAGATGCCCGCCGGGAGCAGC
AAGGCGCAGGTCATCGAGGCGATGCGGGCCAAGGGTGACTCCGGGGTCGCCGACATGCTCTCCGGGATCGACTTCACGCC
CGGCCAGGGCATCGACTTCGGGGCCGTGGGCTCCGTGCTCGGGCTCGCCCTGTGCACCTTCCTGGGGGCCGGTCTGCTGA
TGGCCGTGGCGACGCGGCTGTCCAACCTGGCGCTCAACAAGACCGTCTTCCGGATGCGCGAGGACATCCAGGCGAAGCTG
TCGCGCCTTCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTCCTCAGCCGCGCCACGAACGACATCGACAACAT
CGGGCAGACGCTCCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTCACCATCATCGGTGTGCTGGTGATGATGTTCT
GGATCTCGCCGCTGCTCGCGCTGGTGGCACTGGTGACGGTGCCGCTGTCGTTCCTGATCGCGACGCGGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGACCACCGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGCCACAA
CCTGGTGAAGGTCTTCGGGCGCCAGGAGGAGTCGGCCAAGGCGTTCGCCGAGCAGAACGACGCGCTCTACGAGGCCGGGT
TCAAGGCACAGTTCAACAGCGGGATGATGCAGCCGCTGATGTTCTTCGTGTCGAACCTCAACTATGTGCTGGTCGCCGTG
GTGGGTGGCCTGCGGGTCGCCTCGGGTTCGCTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
CATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGATCTTCGAACTGC
TCGACGCGGACGAGCAGGAGGCCGACCCGGTGCCGGGCGAGAAGCCCGATCTGCTGCGCGGGCTCGTCGAGTTCGAGAAC
GTGTCCTTCCGCTACGAGCAGGACAAGCCGCTCATCGAGGACCTGTCCCTCGCCGTGGAGCCGGGGCACACCGTCGCCAT
CGTCGGCCCGACGGGCGCCGGAAAGACGACGCTGGTCAACCTGCTGCTCCGCTTCTACGAGGTCACCGGCGGGCGCATCA
CCCTCGACGGGGTCGACGTGGCGAAGATGTCGCGCGACGAACTCCGTTCCGGGATCGGCATGGTCCTCCAGGACACGTGG
CTGTTCGGCGGCACGATCGCGGACAACATCGCGTACGGCGCGGCGAAGGACGTCACCCGGGAGCAGATCGAGGAAGCGGC
GCGGGCCGCCCACGCGGACCGGTTCATCCGGACGCTGCCCGAGGGCTACGACACCGTGATCGACGACGAGGGGTCGGGGG
TCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGCGCGTTCCTCTCGGACCCGGTGATACTCGTCCTCGACGAGGCG
ACGAGCTCCGTCGACACCCGTACCGAGGTGCTCATCCAGAAGGCGATGGCGCGGCTCGCCCACGGGCGGACCAGCTTCGT
CATCGCTCACCGGCTGTCCACGATCCGCGACGCCGACACCATCCTGGTGATGGAGAGCGGGGACATCGTGGAGCAGGGCA
CCCACGACGCGCTGCGCGCCGCGGGCGGGGCGTACGAGCGGCTGTACGAGGCTCAGTTCGCGCAGGCCGTGGCGGAGGTG
GAGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(413-562)

ABC transporter transmembrane region (ABC_membrane)

(41-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.195

96.568

0.398