Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MK860_RS07870 Genome accession   NZ_CP092829
Coordinates   1594830..1595609 (+) Length   259 a.a.
NCBI ID   WP_003210838.1    Uniprot ID   -
Organism   Bacillus pumilus strain MS32     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1589830..1600609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK860_RS07850 (MK860_07830) trmFO 1590534..1591838 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MK860_RS07855 (MK860_07835) xerC 1591901..1592818 (+) 918 WP_003211704.1 tyrosine recombinase XerC -
  MK860_RS07860 (MK860_07840) hslV 1592833..1593378 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  MK860_RS07865 (MK860_07845) hslU 1593395..1594795 (+) 1401 WP_003211907.1 HslU--HslV peptidase ATPase subunit -
  MK860_RS07870 (MK860_07850) codY 1594830..1595609 (+) 780 WP_003210838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MK860_RS07875 (MK860_07855) flgB 1595896..1596285 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  MK860_RS07880 (MK860_07860) flgC 1596285..1596737 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  MK860_RS07885 (MK860_07865) fliE 1596749..1597066 (+) 318 WP_065097275.1 flagellar hook-basal body complex protein FliE -
  MK860_RS07890 (MK860_07870) fliF 1597116..1598708 (+) 1593 WP_044141925.1 flagellar basal-body MS-ring/collar protein FliF -
  MK860_RS07895 (MK860_07875) fliG 1598720..1599736 (+) 1017 WP_003210883.1 flagellar motor switch protein FliG -
  MK860_RS07900 (MK860_07880) fliH 1599729..1600493 (+) 765 WP_003212485.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29060.31 Da        Isoelectric Point: 4.6614

>NTDB_id=660592 MK860_RS07870 WP_003210838.1 1594830..1595609(+) (codY) [Bacillus pumilus strain MS32]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=660592 MK860_RS07870 WP_003210838.1 1594830..1595609(+) (codY) [Bacillus pumilus strain MS32]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTAATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTT
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCTTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAATCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGTCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471