Detailed information NTG0660250

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG730_RS24585
• Genome accession: NZ_CP108414
• Coordinates: 5382537..5383514 (+)
• Length: 325 a.a.
• NCBI ID: WP_327306278.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01298
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5377537..5388514

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG730_RS24560 (OG730_24545)	-	5377771..5378490 (+)	720	WP_327309392.1	TetR/AcrR family transcriptional regulator	-
OG730_RS24565 (OG730_24550)	-	5378576..5380105 (+)	1530	WP_327306274.1	MFS transporter	-
OG730_RS24570 (OG730_24555)	-	5380229..5381035 (+)	807	WP_327306275.1	class III extradiol ring-cleavage dioxygenase	-
OG730_RS24575 (OG730_24560)	-	5381028..5381420 (+)	393	WP_327306276.1	hypothetical protein	-
OG730_RS24580 (OG730_24565)	-	5381392..5382039 (-)	648	WP_327306277.1	Uma2 family endonuclease	-
OG730_RS24585 (OG730_24570)	rpoS	5382537..5383514 (+)	978	WP_327306278.1	sigma-70 family RNA polymerase sigma factor	Regulator
OG730_RS24590 (OG730_24575)	-	5383613..5384578 (-)	966	WP_327306279.1	YafY family protein	-
OG730_RS24595 (OG730_24580)	-	5384845..5386248 (+)	1404	WP_327309393.1	MFS transporter	-
OG730_RS24600 (OG730_24585)	-	5386389..5387150 (+)	762	WP_327306280.1	DeoR/GlpR family DNA-binding transcription regulator	-
OG730_RS24605 (OG730_24590)	pfkB	5387147..5388100 (+)	954	WP_327306281.1	1-phosphofructokinase	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 36490.29 Da
• Isoelectric Point: 5.2483

>NTDB_id=660250 OG730_RS24585 WP_327306278.1 5382537..5383514(+) (rpoS) [Streptomyces sp. NBC_01298]
MATRAVARRQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGAIERKGKQPSRDELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRVQREFNRENGRDPEHAEIAAELDTTEKRVGDVLDWARDPVSLNMGVDEDGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKKMARDTG
FDAVA

Nucleotide

• Length: 978 bp

>NTDB_id=660250 OG730_RS24585 WP_327306278.1 5382537..5383514(+) (rpoS) [Streptomyces sp. NBC_01298]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACGAGCAGCGCTCGTGCCGTGGGCGGGGAGATCGCAGACCGCGACCT
GGTCGGCATGTACCTGGACGAGATCGCGCGCACCCCGCTGCTCGACGCGGCCAAGGAAGTCGAGCTCTCGCAGATCATCG
AGGCGGGCGTGTACGCCCAGCAGATCCTCGACGGCGCGATAGAGCGCAAGGGCAAGCAGCCCTCCCGGGACGAGCTCGAA
GCCCTGGCCGCCGAGGGCGAGCGTGCCAAAGAAGTCTTCATCCGCTCGAACCTCCGCCTGGTCGTCGCCGTGGCCCGCCG
CTACCCGCGCAGCGGCCTTCCCCTCCTCGATCTCATCCAGGAGGGCAACGCCGGCCTGGTCCGCGCCGTGGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCGATCACCCGCTCCATCGCCGACCAG
TCCCGCACCATCCGGCTCCCCGTCCACCTGGTGGAGGAGCTCGGCAGGATCCGCCGAGTGCAGCGCGAGTTCAACCGCGA
GAACGGCCGTGACCCGGAGCACGCGGAGATCGCCGCCGAGCTGGACACCACGGAGAAGCGCGTCGGAGACGTCCTGGACT
GGGCGCGCGACCCGGTCAGCCTGAACATGGGCGTGGACGAGGACGGCGACACGCAGTTCGGCGACCTGCTCGAAGACACT
TCGGCGATTTCCCCCGAGCAGTCCGTCCTCTCCCTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGCAAGCTGGACCA
GCGAACCGCGTCGATCATCAAGATGCGTTACGGCATTGACGACGGTCGAGAGCGTACGCTGACAGAAGTGGGCAAGCAGC
ACGGCCTGACCCGCGAGCGGATCCGTCAGATCGAGAAGCACGCGCTGCTCGAACTGAAGAAGATGGCCCGCGACACCGGC
TTCGACGCGGTGGCCTGA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (261-314)

• Sigma-70 region 2 (Sigma70_r2) (93-162)

• Sigma-70 region 3 (Sigma70_r3) (172-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (26-59)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	39.667	92.308	0.366