Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MK616_RS08340 Genome accession   NZ_CP092778
Coordinates   1648849..1649628 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1643849..1654628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS08320 (MK616_08320) trmFO 1644536..1645843 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MK616_RS08325 (MK616_08325) xerC 1645913..1646830 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  MK616_RS08330 (MK616_08330) hslV 1646846..1647391 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  MK616_RS08335 (MK616_08335) hslU 1647408..1648811 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  MK616_RS08340 (MK616_08340) codY 1648849..1649628 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MK616_RS08345 (MK616_08345) flgB 1649982..1650371 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  MK616_RS08350 (MK616_08350) flgC 1650371..1650823 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  MK616_RS08355 (MK616_08355) fliE 1650834..1651154 (+) 321 WP_129092161.1 flagellar hook-basal body complex protein FliE -
  MK616_RS08360 (MK616_08360) fliF 1651197..1652807 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  MK616_RS08365 (MK616_08365) fliG 1652820..1653836 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  MK616_RS08370 (MK616_08370) fliH 1653829..1654584 (+) 756 WP_240680210.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=660196 MK616_RS08340 WP_003154263.1 1648849..1649628(+) (codY) [Bacillus amyloliquefaciens strain WF2020]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=660196 MK616_RS08340 WP_003154263.1 1648849..1649628(+) (codY) [Bacillus amyloliquefaciens strain WF2020]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATCCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471