Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG349_RS21485 Genome accession   NZ_CP108393
Coordinates   4966895..4967890 (+) Length   331 a.a.
NCBI ID   WP_327236148.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01317     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4961895..4972890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - rpoS 4966895..4967890 (+) 996 - - Regulator

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 36759.49 Da        Isoelectric Point: 5.0353

>NTDB_id=660090 OG349_RS21485 WP_327236148.1 4966895..4967890(+) (rpoS) [Streptomyces sp. NBC_01317]
MATRAVARRSATGGSKAASSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYARQILDGEVRSEAGGA
SHEELEALVAAGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAIT
RSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEVAKELDSTPERVNDVLDWARDPVSLNMSVDDDGDTQFG
DLLEDTSAVSPEQSVMTLLRSEELDDLIGKLDERTASIIKMRYGIVDGRERTLTEVGKEHGLTRERIRQIEKHALMELKK
MARDTGFDAAA

Nucleotide


Download         Length: 996 bp        

>NTDB_id=660090 OG349_RS21485 WP_327236148.1 4966895..4967890(+) (rpoS) [Streptomyces sp. NBC_01317]
ATGGCAACCCGTGCCGTCGCCCGTCGTTCCGCCACCGGCGGTTCGAAAGCGGCAAGCAGTGTTCGCGCCGTGGGCGGGGA
GATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATAGCGCGCACACCCCTGCTCGACGCCGCCAAGGAAGTCG
AGCTGTCCCAGACCATCGAGGCAGGTGTGTACGCCCGGCAGATCCTCGACGGAGAGGTGAGGAGCGAGGCGGGCGGAGCC
TCGCACGAAGAGCTCGAGGCGCTGGTCGCCGCGGGCGAGCGTGCGAAGGACGTCTTCATCCGTTCCAACCTCCGTCTGGT
GGTGGCGGTCGCGCGCCGGTATCCGCGCAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGGTGC
GTGCCGTGGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCGACGTACGCCACGTGGTGGATACGTCAGGCCATCACC
CGGTCCATAGCGGACCAGTCCCGTACGATCCGGCTGCCCGTCCACCTGGTGGAGGAGCTGGGCAGGATCCGCCGCGTACA
GCGCGAGTTCAACCGTGAGAACGGCCGCGATCCTGAGCCCGCCGAGGTCGCCAAGGAGCTGGACTCGACCCCGGAGCGGG
TCAACGACGTGCTGGACTGGGCCCGTGACCCGGTCAGCCTGAACATGTCGGTGGACGACGACGGGGACACGCAGTTCGGT
GACCTGCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCGGTGATGACGCTCCTGCGCAGTGAGGAGCTGGACGATCT
GATCGGCAAGCTCGACGAGCGCACGGCCTCGATCATCAAGATGCGCTACGGCATCGTGGACGGCCGGGAGCGCACGCTGA
CCGAGGTCGGCAAGGAACACGGCCTCACGCGCGAGCGGATACGGCAGATCGAAAAGCACGCGCTCATGGAGCTGAAGAAA
ATGGCTCGTGACACCGGCTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(32-65)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70 region 3 (Sigma70_r3)

(178-254)

Sigma-70, region 4 (Sigma70_r4)

(268-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40

90.634

0.363