Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG349_RS05135 Genome accession   NZ_CP108393
Coordinates   1204920..1205960 (+) Length   346 a.a.
NCBI ID   WP_327233445.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01317     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1199920..1210960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - cytR 1204920..1205960 (+) 1041 - - Regulator

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 36803.72 Da        Isoelectric Point: 5.4619

>NTDB_id=660053 OG349_RS05135 WP_327233445.1 1204920..1205960(+) (cytR) [Streptomyces sp. NBC_01317]
MPEPLAGARPTLEAVAARAGVSRATASRVVNGGAGVRQPLVEKVTRAVEELGYVPNHAARTLVTRRTGAVAVIIAEPEIR
IFSDPFFSQQIRGISKELTAHDTQLVLLLLEGPGDYDRIARYLAGGHVDGALAFSLHTDDPIPAITRRAGIPTVYGGRPA
WSVPSEHQTVPYVDADNRGGARAAVRYLWDLGRRRIAHIGGPLDQTSATDRLDGYRDVLPAGDPALIAEGEFTAASGERA
MAELLERCPDLDAVFAANDLMASGALRVLKERGRAVPGEVALVGFDDMDSIAEGTDPPLTTVQQDIEGQGRLMARLLLRG
LDQERAGAPAPDPVITPTTLVRRASA

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=660053 OG349_RS05135 WP_327233445.1 1204920..1205960(+) (cytR) [Streptomyces sp. NBC_01317]
TTGCCCGAGCCGCTCGCAGGGGCCCGGCCCACCCTGGAAGCCGTCGCCGCCCGGGCCGGTGTCTCGCGAGCCACGGCCTC
GCGGGTGGTCAACGGGGGCGCGGGGGTGCGGCAACCGCTGGTCGAGAAGGTGACCAGGGCCGTCGAGGAGCTGGGGTACG
TACCGAACCACGCGGCGCGCACGCTGGTCACCCGGCGGACCGGCGCGGTCGCGGTGATCATCGCCGAGCCGGAGATCCGG
ATCTTCTCCGACCCGTTCTTCTCCCAGCAGATCCGCGGCATCAGCAAGGAACTGACCGCGCACGACACGCAGTTGGTGCT
GCTGCTGCTCGAAGGGCCCGGCGACTACGACCGGATCGCGCGCTATCTGGCGGGCGGCCACGTGGACGGCGCGCTCGCCT
TCTCGCTGCACACCGACGACCCGATCCCCGCGATCACCCGGCGCGCCGGGATCCCGACGGTGTACGGGGGCCGGCCCGCG
TGGAGCGTGCCCTCCGAGCACCAGACCGTGCCGTACGTCGACGCGGACAACCGCGGGGGCGCGCGGGCCGCCGTACGGTA
TCTGTGGGACCTGGGGCGGCGGCGGATCGCGCACATCGGGGGGCCGCTGGACCAGACGTCGGCCACCGACCGCCTCGACG
GCTACCGGGACGTGCTGCCGGCCGGGGACCCGGCGCTGATCGCCGAGGGGGAGTTCACGGCGGCGAGCGGGGAGCGGGCG
ATGGCGGAGCTGCTGGAGCGGTGCCCCGACCTGGACGCGGTGTTCGCGGCCAACGACCTGATGGCGTCGGGCGCCCTGCG
GGTGCTCAAGGAGCGCGGGCGGGCGGTGCCCGGGGAGGTGGCGCTGGTGGGCTTCGACGACATGGACTCGATCGCGGAGG
GCACGGACCCGCCCCTGACGACCGTCCAGCAGGACATCGAGGGCCAGGGCCGGCTGATGGCCCGGCTGCTGCTGCGGGGC
CTGGACCAGGAGCGGGCGGGCGCCCCGGCCCCGGATCCGGTGATCACTCCGACGACGCTGGTACGGCGGGCCTCGGCCTA
G

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(185-345)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.817

100

0.361