Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   OG349_RS02375 Genome accession   NZ_CP108393
Coordinates   561153..563405 (+) Length   750 a.a.
NCBI ID   WP_327232971.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01317     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 556153..568405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - recP/tkt 561153..563405 (+) 2253 - - Machinery gene

Sequence

Protein


Download         Length: 750 a.a.        Molecular weight: 80257.48 Da        Isoelectric Point: 4.8954

>NTDB_id=660050 OG349_RS02375 WP_327232971.1 561153..563405(+) (recP/tkt) [Streptomyces sp. NBC_01317]
MANERSQSHGPAGRAPELALPVAERAGWDTVDVRAVDTVRVLAADAVQKVGNGHPGTAMSLAPLAYLLFQNVMRHDPADD
QWLGRDRFVLSCGHSSLTLYIQLYLAGYGLELEDLRRLRTWGSATPGHPEYRHTRGVEITTGPLGQGFASAVGMAMAARR
ERGLLDPDAAPGSSPFDHHVYVIASDGDMMEGVTSEAASLAGHQELGNLVVVYDSNHISIEDDTDISFSEDTAARYEAYG
WHVQTVDWTRTGDYVEDVDALLAAVKAAKAETSRPSFILLRTIIGWPAPTKRNTGKAHGSALGDEEVAATKSLLGFDPDR
TFAVEDDVLARTRAAGERGREEHAAWQSGYDAWREANPERAALLDRLRAQRLPDGWKRALPEFPADAKGMATRKASGEIL
TALAPVLPELWGGSADLAGSNNTTMEGEPSFVPSERQTEEFPGGPYGRTLHFGIREHAMGSILNGIALQSLTRPYGGTFL
TFSDYMRPAVRLAALMQLPATYVWTHDSIGLGEDGPTHQPVEHLAALRAIPGLDVVRPGDANETTVCWRTILEHSDRPAG
LVLTRQNLPVVDRASDGDAPAVGESGPYAPAEGAARGGYVLADGSGDVPDVILVATGSEVQIALDARTRLHREGLSVRVV
SMPCREWFDAQPVAYQDEVLPPAVRARVSVEAAVGQGWREVVGDAGHIVSLEHYGASADYERLYSEFGITPEAVAAAAHA
SIRDAAAPPYPGGHQRTAAPSGGSTGDLAS

Nucleotide


Download         Length: 2253 bp        

>NTDB_id=660050 OG349_RS02375 WP_327232971.1 561153..563405(+) (recP/tkt) [Streptomyces sp. NBC_01317]
ATGGCGAATGAGCGATCCCAGTCCCACGGCCCGGCGGGCCGCGCCCCTGAACTGGCCCTGCCCGTGGCCGAGCGGGCGGG
GTGGGACACCGTGGACGTGCGGGCCGTGGACACCGTACGGGTGCTGGCGGCCGACGCGGTCCAGAAGGTCGGCAACGGCC
ACCCCGGCACCGCGATGAGCCTGGCGCCCCTCGCGTACCTGCTGTTCCAGAACGTGATGCGGCACGACCCGGCCGACGAC
CAGTGGCTGGGCCGGGACCGCTTCGTCCTGTCGTGCGGGCATTCGAGCCTGACCCTCTACATCCAGCTGTACCTGGCCGG
TTACGGGCTCGAACTGGAGGATCTGCGCCGGCTGCGGACGTGGGGATCCGCGACGCCCGGCCACCCGGAGTACCGGCACA
CCCGGGGTGTCGAGATCACCACGGGCCCCCTGGGCCAGGGCTTCGCGAGCGCGGTCGGGATGGCCATGGCGGCCCGGCGG
GAACGGGGTCTGCTGGACCCGGACGCGGCCCCCGGCAGCAGCCCGTTCGACCATCACGTCTACGTGATCGCGTCCGACGG
CGACATGATGGAGGGCGTCACCTCCGAGGCCGCGTCCCTCGCCGGCCACCAGGAGCTGGGCAACCTGGTCGTCGTCTACG
ACTCGAACCACATCTCCATCGAGGACGACACCGACATCTCCTTCAGCGAGGACACGGCCGCGCGCTACGAGGCCTACGGC
TGGCACGTACAAACGGTGGACTGGACCCGTACGGGTGACTACGTCGAGGACGTCGACGCGCTGCTGGCCGCCGTGAAGGC
CGCCAAGGCGGAGACCTCCCGGCCCTCGTTCATCCTGCTGCGTACGATCATCGGCTGGCCCGCGCCCACCAAGCGCAACA
CCGGCAAGGCGCACGGCTCCGCGCTCGGCGACGAGGAGGTCGCGGCGACCAAGTCCCTCCTCGGCTTCGACCCCGACCGT
ACGTTCGCCGTCGAGGACGACGTACTGGCCAGGACCCGGGCGGCCGGCGAGCGGGGCCGGGAGGAGCACGCCGCCTGGCA
GTCCGGCTACGACGCGTGGCGCGAGGCCAACCCGGAGCGCGCCGCGCTGCTGGACCGGCTCCGGGCCCAGCGGCTGCCCG
ACGGCTGGAAGCGGGCGCTGCCCGAGTTCCCCGCCGACGCCAAGGGCATGGCCACCCGCAAGGCGTCCGGGGAGATCCTC
ACCGCGCTCGCACCGGTGCTGCCCGAACTGTGGGGCGGTTCGGCCGACCTGGCGGGCAGCAACAACACCACGATGGAGGG
GGAGCCGTCGTTCGTGCCCTCCGAGCGGCAGACCGAGGAGTTCCCCGGCGGCCCCTACGGGCGGACGCTGCACTTCGGCA
TCCGCGAGCACGCCATGGGCTCGATCCTCAACGGCATCGCGCTCCAGAGCCTGACCAGGCCGTACGGCGGTACGTTCCTG
ACGTTCAGTGACTACATGCGGCCGGCGGTCCGGCTCGCGGCGCTGATGCAGCTGCCCGCCACCTACGTGTGGACCCATGA
CTCCATCGGACTCGGCGAGGACGGTCCCACCCACCAGCCGGTCGAGCATCTGGCCGCGCTGCGGGCCATCCCCGGTCTGG
ACGTCGTACGGCCCGGGGACGCCAACGAGACCACCGTGTGCTGGCGGACGATCCTGGAGCACTCGGACCGGCCCGCCGGG
CTCGTCCTGACCCGCCAGAACCTCCCCGTCGTCGACAGGGCGTCGGACGGCGACGCGCCGGCGGTCGGGGAGAGCGGCCC
GTACGCCCCGGCCGAGGGCGCGGCCCGCGGCGGCTATGTCCTGGCGGACGGGTCAGGGGACGTACCCGACGTCATCCTGG
TCGCGACCGGATCCGAGGTGCAGATCGCTCTGGACGCGCGCACTCGACTGCACCGGGAAGGGCTGTCCGTACGGGTCGTG
TCCATGCCGTGCCGGGAGTGGTTCGACGCCCAGCCCGTCGCGTACCAGGACGAGGTGCTGCCGCCGGCCGTCCGGGCCCG
CGTGAGTGTCGAGGCCGCGGTGGGGCAGGGCTGGCGCGAGGTGGTCGGCGACGCCGGTCATATCGTCAGCCTGGAGCACT
ACGGGGCGTCGGCCGACTACGAGCGCCTGTACAGCGAGTTCGGCATCACCCCCGAGGCGGTCGCCGCCGCCGCGCACGCC
AGCATCCGGGACGCGGCGGCCCCGCCGTACCCCGGTGGACATCAGCGGACCGCCGCGCCGTCCGGGGGAAGCACCGGCGA
CCTGGCGTCCTGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(389-569)

Transketolase, C-terminal domain (Transketolase_C)

(609-714)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(32-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

43.271

92.133

0.399