Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG395_RS34880 Genome accession   NZ_CP108390
Coordinates   7693300..7695033 (-) Length   577 a.a.
NCBI ID   WP_327246472.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01320     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7688300..7700033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG395_RS34865 (OG395_34840) - 7688439..7689671 (+) 1233 WP_327246470.1 RNA polymerase sigma factor -
  OG395_RS34870 (OG395_34845) - 7690244..7690900 (+) 657 WP_327249553.1 IS630 family transposase -
  OG395_RS34875 (OG395_34850) - 7691375..7693300 (-) 1926 WP_327246471.1 ABC transporter ATP-binding protein -
  OG395_RS34880 (OG395_34855) rcrP 7693300..7695033 (-) 1734 WP_327246472.1 ABC transporter ATP-binding protein Regulator
  OG395_RS34885 (OG395_34860) - 7695202..7696647 (-) 1446 WP_327246473.1 FGGY family carbohydrate kinase -
  OG395_RS34890 (OG395_34865) - 7696708..7697013 (-) 306 WP_266990748.1 YtxH domain-containing protein -
  OG395_RS34910 (OG395_34885) - 7697841..7698695 (-) 855 WP_327246474.1 hypothetical protein -
  OG395_RS34915 (OG395_34890) - 7698952..7699305 (+) 354 WP_327246475.1 extradiol dioxygenase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62753.93 Da        Isoelectric Point: 5.9320

>NTDB_id=659935 OG395_RS34880 WP_327246472.1 7693300..7695033(-) (rcrP) [Streptomyces sp. NBC_01320]
MLIKLLRGYLGPYKKPIVLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILEYGGIMIAVSIAQVVCNMGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGIILALGQDVPLSAV
LLAVVPVLGIAVGLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDPYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVKPVRELRAHGHLEVRGVDFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLLDVTDGQVLVDGTDVR
TLEPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEKLEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALSRETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=659935 OG395_RS34880 WP_327246472.1 7693300..7695033(-) (rcrP) [Streptomyces sp. NBC_01320]
GTGCTCATAAAACTCCTGCGGGGCTACCTCGGCCCGTACAAGAAACCGATCGTGCTGCTGGTGGCGCTCCAGCTGCTGCA
GACCTGCGCCACCCTCTATCTCCCCTCACTCAACGCCGACATCATTGACAACGGTGTCGTCGAGGGGGACACGGGCTACA
TCCTGGAGTACGGCGGCATCATGATCGCCGTCTCCATCGCCCAGGTCGTCTGCAACATGGGGGCGGTCTTCTACGGTGCG
CGCACCGCGGCCGCACTCGGCCGGGACGTCCGGGCGTCGGTCTTCGACCGGGTTCAGTCGTTCTCGGCACGTGAGGTCGG
CCGCTTCGGGGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACATTCA
CCATGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCCTGGCCCTCGGCCAGGACGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTCCTCGGCATCGCGGTGGGTCTCATCGTGCGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGAACGGCTCGACACAGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTGCGGGACC
CGTACGAGGAGAAGCGGTTCCGCGGCGCCAACACCGAGCTGACCGATGTGGCGCTCTCCACCGGGCGTCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGTGCGCTGACCGCGTTCCTCTCCTACCTGATGCAGATCGTCATGTCAGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAAACCGATTCGAGCGTCGTGCCG
CCGGTCAAGCCGGTGCGGGAGCTGCGCGCCCACGGTCATCTGGAGGTGCGGGGTGTGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGTCGGTGGATCTGGTGGCACGGCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGTAGTGGGA
AGTCGACGCTGCTCGGTCTCGTACCGCGGCTGCTCGACGTGACGGACGGCCAGGTGCTGGTCGACGGCACGGACGTACGG
ACGCTGGAGCCGGCACTGCTGGCGAAGACGGTGAGTCTGGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGAAGCTGGAGCACGGGCTGCACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGAGAACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
TGCCGCGCTGCGCGGGGCACTGTCACGGGAGACGGCCGAGGCGACCGTGGTGATAGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTCGACGAGGGCCGGGTCGTCGGGTCCGGTACCCATCACGAGCTGATGGACGGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.734

99.133

0.404