Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MKS83_RS09430 Genome accession   NZ_CP092711
Coordinates   2123485..2124138 (+) Length   217 a.a.
NCBI ID   WP_240582952.1    Uniprot ID   -
Organism   Chryseobacterium sp. Y16C     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2118485..2129138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS83_RS09415 (MKS83_09415) aceA 2118740..2120020 (-) 1281 WP_240582949.1 isocitrate lyase -
  MKS83_RS09420 (MKS83_09420) aceB 2120252..2121826 (-) 1575 WP_240582950.1 malate synthase A -
  MKS83_RS09425 (MKS83_09425) - 2121953..2123428 (+) 1476 WP_240582951.1 helix-turn-helix domain-containing protein -
  MKS83_RS09430 (MKS83_09430) comF 2123485..2124138 (+) 654 WP_240582952.1 ComF family protein Machinery gene
  MKS83_RS09435 (MKS83_09435) - 2124244..2124930 (+) 687 WP_240582953.1 alpha/beta fold hydrolase -
  MKS83_RS09440 (MKS83_09440) upp 2124932..2125585 (-) 654 WP_100376609.1 uracil phosphoribosyltransferase -
  MKS83_RS09445 (MKS83_09445) der 2125666..2126976 (-) 1311 WP_240582954.1 ribosome biogenesis GTPase Der -
  MKS83_RS09455 (MKS83_09455) - 2128281..2128907 (+) 627 WP_240582955.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25390.56 Da        Isoelectric Point: 8.8856

>NTDB_id=659753 MKS83_RS09430 WP_240582952.1 2123485..2124138(+) (comF) [Chryseobacterium sp. Y16C]
MILDLLFPNRCIHCNRIIGGNLLVCNLCFEQIHFTHFNYFENNHLKERCKLLFPIVNAFALMQFEKENLSRKIVHDLKYK
SREKIGKILADWTFERLDFKNEKPDVFVSVPLHPKKLKERGYNQLHLFTETLSKFYEIPFSHDLIKRNHYSKAQALKDKQ
HRLDTENIFSISKSISGKHVLLIDDVFTTGNTLSTIAWEILKAGDNTVSILVMAIDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=659753 MKS83_RS09430 WP_240582952.1 2123485..2124138(+) (comF) [Chryseobacterium sp. Y16C]
ATGATTTTAGATCTCTTATTTCCGAATCGTTGCATTCATTGCAACCGGATTATTGGTGGCAATTTACTTGTCTGCAATCT
TTGTTTTGAGCAAATCCACTTTACTCATTTTAATTATTTTGAAAACAATCATCTGAAAGAAAGATGCAAATTACTATTTC
CTATTGTGAATGCTTTTGCTTTGATGCAGTTTGAAAAAGAAAACTTAAGCAGAAAAATTGTGCATGATCTGAAATATAAA
AGCAGAGAAAAGATCGGAAAAATTCTTGCAGACTGGACTTTTGAACGGTTAGATTTTAAAAACGAAAAACCGGATGTATT
CGTTTCTGTTCCTTTACATCCCAAAAAACTGAAAGAAAGAGGTTATAATCAACTTCATTTATTTACAGAAACTTTATCTA
AGTTTTATGAAATTCCATTTAGTCATGATTTAATCAAAAGAAATCATTATTCAAAGGCTCAGGCTTTGAAAGACAAGCAG
CATCGATTGGATACAGAAAATATTTTTTCTATTAGCAAAAGTATTTCAGGGAAGCATGTTTTATTAATTGATGATGTTTT
CACCACGGGAAATACTTTATCAACTATTGCATGGGAAATTTTAAAGGCAGGAGATAATACAGTGAGTATTCTTGTTATGG
CGATTGATGTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(89-203)

Double zinc ribbon domain (DZR_2)

(2-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.852

99.539

0.516