Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG384_RS10615 Genome accession   NZ_CP108385
Coordinates   2325655..2327586 (+) Length   643 a.a.
NCBI ID   WP_327336758.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01324     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2320655..2332586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG384_RS10600 (OG384_10605) - 2321902..2322201 (+) 300 WP_073735922.1 hypothetical protein -
  OG384_RS10605 (OG384_10610) - 2322308..2323753 (+) 1446 WP_327336756.1 FGGY family carbohydrate kinase -
  OG384_RS10610 (OG384_10615) rcrP 2323922..2325655 (+) 1734 WP_327336757.1 ABC transporter ATP-binding protein Regulator
  OG384_RS10615 (OG384_10620) rcrQ 2325655..2327586 (+) 1932 WP_327336758.1 ABC transporter ATP-binding protein Regulator
  OG384_RS10620 (OG384_10625) - 2327633..2328742 (-) 1110 WP_327336759.1 RNA polymerase sigma factor -
  OG384_RS10625 (OG384_10630) dnaG 2328936..2330855 (-) 1920 WP_327336760.1 DNA primase -
  OG384_RS10630 (OG384_10635) - 2331279..2332538 (-) 1260 WP_073735928.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69269.56 Da        Isoelectric Point: 5.1115

>NTDB_id=659737 OG384_RS10615 WP_327336758.1 2325655..2327586(+) (rcrQ) [Streptomyces sp. NBC_01324]
MAGPGGRMMAGGAPTQRSTDFKGSTKRLLKRFAPERATLYVMLAAGALSVALSVVGPKILGKATDLVFAGVIGRQMPEGT
SKEQALAGLHKTNSGLADMLSKVDFTPGKGMDFDAIGHVLLAALITYVGAGLLMLVSTRLSIRVINRVVFQMREDIQTKL
SRLPLSYFDQQKRGEVLSRATNDIDNISQTMQQTMGQLINSVLTIIGVLIMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
IGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLLQSGVASAERIFELLDAEEQDADPAKGEGAHPEELRGSVSL
ENVSFRYDPEKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVATMSRDDLRSGIGMVLQD
TWLFGGTIAENIAYGASGEVGREEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLAADGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=659737 OG384_RS10615 WP_327336758.1 2325655..2327586(+) (rcrQ) [Streptomyces sp. NBC_01324]
ATGGCTGGGCCTGGCGGACGCATGATGGCCGGCGGGGCACCGACCCAGCGGTCCACGGACTTCAAGGGCTCGACGAAGCG
GTTGCTGAAGCGCTTCGCCCCGGAGCGGGCCACGCTGTACGTGATGCTGGCGGCCGGTGCGCTGAGCGTGGCGCTCTCCG
TGGTCGGCCCGAAGATCCTCGGCAAGGCCACCGACCTGGTGTTCGCCGGGGTCATCGGCCGGCAGATGCCGGAGGGGACG
AGCAAGGAGCAGGCCCTCGCGGGACTGCACAAGACCAACAGCGGCCTCGCCGACATGCTCTCCAAGGTGGACTTCACCCC
GGGCAAGGGCATGGACTTCGACGCGATCGGCCATGTGCTGCTGGCCGCGCTGATCACGTACGTCGGTGCCGGGCTGCTGA
TGCTGGTGTCGACGCGGCTGTCGATCCGGGTGATCAACCGGGTCGTGTTCCAAATGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTGTCCTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCGGTGCTGACCATCATCGGCGTGCTGATCATGATGTTCT
GGATCTCCCCGCTGCTGGCGCTCGTCGCGCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCGACCAAGGTGGGCAAGCGC
TCGCAGCCGCAGTTCGTCCAGCAGTGGAAGGTCACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGCCGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGATCGCCGTC
ATCGGCGGGCTGCGGGTCGCCTCGGGTGCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTTCTC
CATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGCTGCAGTCCGGGGTGGCCTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCGGAGGAGCAGGACGCAGACCCCGCGAAGGGCGAGGGCGCGCACCCGGAGGAGCTGCGCGGCAGCGTCTCGCTG
GAGAACGTCTCGTTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGACCTGTCGCTGAGTGTCGAGCCGGGTCACACGGT
CGCGATCGTCGGACCGACCGGTGCGGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACCGGCGGCC
GGATCGCCCTGGACGGGGTGGACGTCGCGACGATGTCGCGCGACGACCTGCGGTCCGGCATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCGTACGGCGCCTCGGGCGAGGTCGGCCGGGAGGAGATCGAGGA
GGCGGCGCGGGCGGCCCACGCCGACCGCTTCATCCGCACCCTGCCGGACGGCTACGACACGGTGATCGACGACGAGGGCA
CCGGCGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATACTCGTGCTGGAC
GAGGCGACCAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTCGCGCACGGCCGTACGAG
TTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGACGCCGATGTCATCCTCGTGATGGAGAACGGCTCGATCGTCGAGC
AGGGCACGCACGACGAGCTGCTGGCGGCGGACGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCC
GAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(58-350)

ABC transporter (ABC_tran)

(415-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.807

96.89

0.386