Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MKR81_RS15500 Genome accession   NZ_CP092682
Coordinates   3361603..3362328 (+) Length   241 a.a.
NCBI ID   WP_240304838.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3356603..3367328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS15485 (MKR81_15485) - 3357708..3360029 (+) 2322 WP_240304835.1 Tex family protein -
  MKR81_RS15490 (MKR81_15490) - 3360154..3360618 (-) 465 WP_240304836.1 ATP-dependent Lon protease -
  MKR81_RS15495 (MKR81_15495) bioH 3360754..3361518 (-) 765 WP_240304837.1 pimeloyl-ACP methyl ester esterase BioH -
  MKR81_RS15500 (MKR81_15500) comF 3361603..3362328 (+) 726 WP_240304838.1 ComF family protein Machinery gene
  MKR81_RS15505 (MKR81_15505) nfuA 3362426..3363010 (+) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  MKR81_RS15510 (MKR81_15510) nudE 3363186..3363752 (+) 567 WP_240304839.1 ADP compounds hydrolase NudE -
  MKR81_RS15515 (MKR81_15515) cysQ 3363800..3364627 (+) 828 WP_240304840.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  MKR81_RS15520 (MKR81_15520) - 3364918..3365679 (-) 762 WP_010650510.1 type II secretion system protein N -
  MKR81_RS15525 (MKR81_15525) - 3365681..3366172 (-) 492 WP_240305613.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27646.74 Da        Isoelectric Point: 8.1508

>NTDB_id=659685 MKR81_RS15500 WP_240304838.1 3361603..3362328(+) (comF) [Vibrio campbellii strain IFL1]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIERCVRCGLKMTETESQAATECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVWHVGALTQLLAERVEQPAPVITSVPVHWQRFLKRGFNQSHILAKHLSHHLDVRYEN
KVFKRVKNVQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=659685 MKR81_RS15500 WP_240304838.1 3361603..3362328(+) (comF) [Vibrio campbellii strain IFL1]
ATGTTATCTCATCAATGGCAAAACATCATGCACCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATTCCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGATAGCTGTTTTGACCATCTCACACCAATTGAGCGCTGCGTGCGTTGTG
GTTTAAAAATGACAGAAACGGAATCACAAGCCGCCACAGAGTGTGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTGGGGGATTATGACTTCCCGCTCTCTCAACAAGTACAGCGTTTTAAAGATCACGGCGAAGTCTGGCATGT
GGGCGCGCTCACTCAATTATTAGCAGAGCGAGTTGAGCAGCCTGCCCCAGTGATTACAAGTGTGCCCGTTCACTGGCAGC
GCTTCTTAAAACGAGGTTTCAACCAGAGTCACATCTTGGCCAAACACCTCTCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAACGTCCAATCACAACGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

97.925

100

0.979
  comF Vibrio cholerae strain A1552

46.639

98.755

0.461