Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG599_RS11530 Genome accession   NZ_CP108370
Coordinates   2714188..2716431 (-) Length   747 a.a.
NCBI ID   WP_327175895.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01335     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2709188..2721431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG599_RS11520 (OG599_11540) - 2709700..2712027 (+) 2328 WP_327175893.1 heavy metal translocating P-type ATPase -
  OG599_RS11525 (OG599_11545) - 2712665..2713963 (-) 1299 WP_327175894.1 citrate synthase -
  OG599_RS11530 (OG599_11550) recD/recD2/recDB 2714188..2716431 (-) 2244 WP_327175895.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG599_RS11535 (OG599_11555) - 2716591..2716791 (+) 201 Protein_2275 MBL fold metallo-hydrolase -
  OG599_RS11540 (OG599_11560) - 2716838..2717902 (-) 1065 WP_327180001.1 PP2C family protein-serine/threonine phosphatase -
  OG599_RS11545 (OG599_11565) - 2718305..2718658 (+) 354 WP_327175896.1 hypothetical protein -
  OG599_RS11550 (OG599_11570) - 2718832..2719767 (-) 936 WP_327175897.1 LysR family transcriptional regulator -
  OG599_RS11555 (OG599_11575) - 2719895..2721142 (+) 1248 WP_327175898.1 MFS transporter -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 80903.42 Da        Isoelectric Point: 6.6509

>NTDB_id=659684 OG599_RS11530 WP_327175895.1 2714188..2716431(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01335]
MPNAPTPPPNLAVLEGVLERITYANEENGYTVARVDTGRGGDLLTVVGSLLGAQPGESLRMEGRWASHQQYGKQFVVENY
TTVLPATIQGIRRYLGSGLIKGIGPVMADRITTHFGTDTLDIIENEPKRLVEVPGLGPKRTKKIADAWEEQKAIKEVMIF
LQSVGVSTSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVRAGLQYALSQSSDQGHCY
LPEERLIADGVKLLQADTGLVIECLAELAADPEGVVREKVPSPEGGEPVTAVYLVPFHRAELSLAGQVRRLLRTPEDRMP
AFQEVDWEKALEWLARRTGATLAPEQEAAVRLALSRKVAVLTGGPGCGKSFTVRSVVELARAKQAKVVLAAPTGRAAKRL
SELTGAEASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVL
RDLLAEGGPVPAVRLTRIFRQAQQSGVVTNAHRINSGQPPLTQGLDDFFLFVEDETEDAGVLAVDVAARRIPKKFGLDPR
RDIQVLTPMHRGPAGAGHLNGLLQQVITPGRPELPEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVGVVTSLDTDEQ
RLTVRTDEDEEIGYDFDELDELAHAYAMTIHRSQGSEYPAVVVPVTTSAWMMLQRNLLYTAVTRAKRLVVLVGSRKAIGQ
AVRTVSAGRRCTALDFRLRGGAGGDSP

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=659684 OG599_RS11530 WP_327175895.1 2714188..2716431(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01335]
ATGCCCAACGCGCCCACCCCGCCCCCCAACCTGGCAGTCCTCGAAGGGGTCCTGGAGCGGATCACCTACGCCAACGAGGA
GAACGGGTACACCGTCGCCCGCGTCGACACCGGGCGCGGCGGCGACCTGCTCACCGTGGTGGGCTCGCTGCTCGGCGCGC
AGCCGGGGGAGTCGCTGCGGATGGAGGGCCGCTGGGCCTCCCACCAGCAGTACGGCAAACAGTTCGTCGTGGAGAACTAC
ACGACGGTGCTCCCCGCCACCATCCAGGGCATCCGCCGCTACCTCGGCTCCGGGCTGATCAAGGGCATCGGCCCGGTCAT
GGCCGACCGGATCACCACCCACTTCGGCACCGACACCCTCGACATCATCGAGAACGAGCCCAAGCGGCTGGTAGAGGTCC
CCGGGCTCGGCCCGAAGCGCACCAAGAAGATCGCCGACGCCTGGGAGGAACAGAAGGCGATCAAGGAGGTCATGATCTTC
CTCCAGTCGGTCGGGGTCTCGACCTCGATCGCGGTGCGGATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAA
GAACCAGCCCTACCGGCTGGCCGCCGACGTCTGGGGCATCGGCTTCCTGACCGCCGACCGGATCGCCCAGGCGGTCGGCA
TTCCGCACGACAGCCCGGAACGCGTGCGCGCCGGACTGCAGTACGCCCTCTCCCAGTCCTCCGACCAGGGCCACTGCTAC
CTCCCCGAGGAACGGCTGATCGCCGACGGCGTGAAGCTGCTCCAGGCCGACACCGGCCTTGTCATCGAGTGCCTCGCCGA
ACTAGCCGCCGACCCGGAGGGCGTCGTACGCGAGAAGGTGCCCTCCCCGGAGGGCGGAGAACCGGTCACGGCCGTGTACC
TCGTGCCCTTCCACCGGGCAGAGCTCTCCCTCGCCGGGCAGGTGCGCCGGCTGCTGCGGACCCCGGAGGACCGGATGCCC
GCCTTCCAGGAGGTCGACTGGGAGAAGGCGCTGGAGTGGCTGGCCCGTCGGACCGGCGCCACCCTCGCGCCCGAGCAGGA
AGCGGCGGTGCGCCTCGCGCTGAGCCGGAAGGTGGCCGTGCTGACCGGCGGACCGGGGTGCGGGAAGTCGTTCACCGTAC
GCTCCGTGGTCGAGCTGGCCCGCGCGAAGCAGGCGAAGGTGGTGCTGGCCGCCCCCACCGGGCGGGCCGCGAAGCGCCTC
TCCGAGCTGACCGGCGCCGAGGCGTCCACCGTGCACCGGCTCCTCGAACTGAAACCGGGCGGGGACGCCGCGTACGACAG
GGACCGCCCGCTCGACGCCGATCTGGTGGTCGTGGACGAGGCGTCCATGCTCGATCTGCTGCTCGCCAACAAGCTCGTGA
AGGCGGTGGCACCCGGTGCCCACCTCCTCCTCGTGGGCGACGTGGACCAGCTGCCGTCGGTCGGCGCGGGCGAGGTGCTG
CGGGACCTGCTCGCCGAGGGCGGGCCCGTACCGGCCGTCCGGCTGACCCGGATCTTCCGCCAGGCACAGCAGTCCGGGGT
GGTCACCAACGCCCACCGCATCAACTCCGGACAGCCCCCGCTCACCCAGGGACTCGACGACTTCTTCCTCTTCGTGGAGG
ACGAGACGGAGGACGCCGGGGTGCTCGCCGTGGACGTGGCGGCCCGCCGCATCCCGAAGAAGTTCGGGCTCGACCCGCGC
CGCGACATCCAGGTGCTCACCCCCATGCACCGGGGCCCGGCCGGCGCCGGGCACCTCAACGGCCTGCTCCAGCAGGTCAT
CACCCCGGGCCGCCCCGAACTGCCGGAGAAGCGGTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTCACCCAGATCC
GCAACAACTACGAGAAGGGCGAGAACGGCGTCTTCAACGGCACCGTCGGCGTCGTGACCTCGCTGGACACCGACGAGCAG
CGGCTGACCGTGCGCACCGACGAGGACGAGGAGATCGGCTACGACTTCGACGAGCTGGACGAGCTGGCCCACGCCTATGC
CATGACGATCCACCGCTCCCAGGGCAGCGAGTACCCGGCCGTCGTCGTCCCCGTCACCACCAGCGCCTGGATGATGCTCC
AGCGCAACCTCCTCTACACCGCCGTGACCCGGGCCAAGAGGCTCGTCGTCCTGGTCGGCTCCCGCAAGGCGATCGGGCAG
GCAGTCCGCACGGTTTCCGCCGGGAGGCGCTGTACGGCGCTGGATTTCCGGCTCAGGGGAGGGGCGGGGGGAGACTCACC
GTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(341-520)

Helix-hairpin-helix domain (HHH_5)

(100-149)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(579-645)

Helix-hairpin-helix containing domain (HHH_RecD2)

(150-240)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(664-712)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.629

100

0.36