Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG599_RS10300 Genome accession   NZ_CP108370
Coordinates   2407448..2409181 (+) Length   577 a.a.
NCBI ID   WP_327175672.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01335     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2402448..2414181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG599_RS10265 (OG599_10285) - 2403652..2403933 (+) 282 WP_327175668.1 type II toxin-antitoxin system prevent-host-death family antitoxin -
  OG599_RS10270 (OG599_10290) - 2403930..2404193 (+) 264 WP_327175669.1 Txe/YoeB family addiction module toxin -
  OG599_RS10290 (OG599_10310) - 2405449..2405754 (+) 306 WP_327175670.1 YtxH domain-containing protein -
  OG599_RS10295 (OG599_10315) - 2405855..2407327 (+) 1473 WP_327175671.1 FGGY family carbohydrate kinase -
  OG599_RS10300 (OG599_10320) rcrP 2407448..2409181 (+) 1734 WP_327175672.1 ABC transporter ATP-binding protein Regulator
  OG599_RS10305 (OG599_10325) - 2409181..2411106 (+) 1926 WP_327175673.1 ABC transporter ATP-binding protein -
  OG599_RS10310 (OG599_10330) - 2411201..2412334 (-) 1134 WP_327179986.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62786.95 Da        Isoelectric Point: 6.1044

>NTDB_id=659680 OG599_RS10300 WP_327175672.1 2407448..2409181(+) (rcrP) [Streptomyces sp. NBC_01335]
MLIKLLRSFLGPYRRPILLLVFLQLLQTCASLYLPSLNADIIDNGVVKGDTGYILEYGGVMIAVSVVQVVCNIGAVYFGA
RTASSLGRDLRASVFDRVQSFSAREVARFGAPSLITRTTNDVQQIQMLVLMSFTLMVSAPIMCVGGIIMALGQDVPLSSV
LLAVVPLLGIAVSLIVRKMRPLFRTMQKRLDTVNRVLREQITGNRVIRAFVRDGYEVERFRGANTELTDVAVSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERVDEVLETESSVVP
PVAPVTELRRHGHLELRGAEFRYPGAEEPVLRTVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTEGEVLVDGTDVR
TLDPALLAKTVSLVPQKPYLFSGTVASNLRYGNPDATDEELWHALEVAQAKEFVERLDNGLNSAIAQGGTNVSGGQRQRL
AIARTLVRKPEIYLFDDSFSALDYATDAALRAALGRETAGATVVIVAQRVSTIRDADRILVLDEGRVVGTGTHRELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=659680 OG599_RS10300 WP_327175672.1 2407448..2409181(+) (rcrP) [Streptomyces sp. NBC_01335]
GTGCTCATAAAACTGCTCAGGTCCTTCCTGGGCCCCTACCGAAGGCCGATCCTGCTGCTGGTGTTCCTCCAGCTCCTGCA
GACCTGCGCCTCGCTCTACCTGCCCAGCCTGAACGCCGACATCATCGACAACGGTGTCGTGAAGGGCGACACGGGCTACA
TCCTGGAGTACGGCGGCGTGATGATCGCCGTCAGCGTCGTCCAGGTCGTCTGCAACATCGGCGCCGTCTACTTCGGGGCG
CGGACCGCTTCCTCGCTCGGCCGCGACCTGCGGGCCTCGGTCTTCGACCGGGTGCAGTCGTTCTCGGCCCGTGAGGTCGC
CCGGTTCGGGGCACCCTCGCTGATCACCCGTACGACCAACGACGTCCAGCAGATCCAGATGCTGGTCCTGATGAGCTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGCGTCGGCGGGATCATCATGGCGCTCGGCCAGGACGTGCCGCTCTCCTCCGTG
CTGCTGGCCGTGGTGCCGCTGCTGGGGATCGCGGTGAGCCTGATCGTCCGGAAGATGCGGCCGCTGTTCCGCACGATGCA
GAAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTGATCCGCGCCTTCGTGCGCGACG
GGTACGAGGTGGAGCGGTTCCGGGGCGCGAACACGGAGCTGACGGACGTGGCGGTGTCCACGGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTGAACGTGTCGTCGATCGCGGTGGTGTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACGGCGTTCCTGTCCTATCTGATGCAGATCGTCATGTCCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCGGAGCGCGTCGACGAGGTCCTGGAGACCGAGTCCAGCGTGGTGCCG
CCCGTCGCCCCGGTGACGGAGCTGCGCCGCCACGGCCATCTGGAGCTGCGGGGTGCGGAGTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGCACGGTGGACCTGGTGGCCCGGCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTGGGGCTGGTGCCGCGGCTGTTCGACGTGACGGAGGGCGAGGTCCTCGTCGACGGTACGGACGTGCGG
ACGCTGGATCCGGCGCTGCTGGCGAAGACGGTGAGCCTGGTCCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTGGCGTC
GAACCTGCGGTACGGGAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGGAGCGGCTGGACAACGGCCTGAACTCGGCGATCGCGCAGGGCGGCACCAATGTCTCCGGTGGTCAGCGGCAGCGTCTG
GCCATCGCGCGGACGCTGGTGCGCAAGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCGCTCGACTACGCGACCGA
CGCGGCGCTGCGTGCGGCGCTCGGGCGGGAGACGGCGGGGGCGACGGTGGTGATCGTCGCGCAGCGGGTGTCGACCATCC
GAGACGCCGACCGGATTCTCGTCCTGGACGAGGGCCGGGTCGTGGGCACGGGTACCCATCGCGAGCTGATGGACGGCAAT
GAGACGTACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCGGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.206

100

0.406