Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG585_RS16175 Genome accession   NZ_CP108365
Coordinates   3566588..3568852 (-) Length   754 a.a.
NCBI ID   WP_266624830.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01340     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3561588..3573852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG585_RS16165 (OG585_16180) - 3561915..3564197 (+) 2283 WP_266624829.1 heavy metal translocating P-type ATPase -
  OG585_RS16170 (OG585_16185) - 3564916..3566205 (-) 1290 WP_054231840.1 citrate synthase -
  OG585_RS16175 (OG585_16190) recD/recD2/recDB 3566588..3568852 (-) 2265 WP_266624830.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG585_RS16180 (OG585_16195) - 3569032..3570066 (+) 1035 WP_266582574.1 LacI family DNA-binding transcriptional regulator -
  OG585_RS16185 (OG585_16200) - 3570063..3571595 (+) 1533 WP_266624832.1 sugar ABC transporter ATP-binding protein -
  OG585_RS16190 (OG585_16205) - 3571585..3573537 (+) 1953 WP_266624833.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 754 a.a.        Molecular weight: 81774.44 Da        Isoelectric Point: 6.5803

>NTDB_id=659519 OG585_RS16175 WP_266624830.1 3566588..3568852(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01340]
MSNQVGNRQTQLAVVEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGALLGAQVGESLRMEGRWGSHPQYGKQFTVE
NYTTVLPATVQGIRRYLGSGLVKGIGPIFADRITQHFGLDTLQIIEEEPKRLIEVPGLGPKRTKKIAEAWEEQKAIKEVM
LFLQTVEVSTSIAVRIYKKYGDASISVVKNQPYRLAADVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSADQGH
CFLPEEQLIADAVKLLQVDTGLVIECLAELAEPTVDENEPGGVREPGVVRERVPGPDGGPETVTAVYLVPFHRAELSLSA
QLLRLLRTTEDRMPGFHDVAWDKALTWLKGRTGAELAPGQEEAVRLALTKKVAVLTGGPGCGKSFTVRSIVELARAKRAK
VVLAAPTGRAAKRLAELTGADASTVHRLLELRPGGDAAYDKERPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVG
DVDQLPSVGAGEVLRDLLADQSPIPSVRLTQVFRQAQQSGVVTNAHRINSGQHPVTDGMKDFFLFVEDETEEAGRLTVDV
AARRIPAKFGLDPRRDIQVLAPMHRGPAGAGTLNGLLQQAITPGRPDLPEKRFGGRVFRVGDKVTQIRNNYEKGENGVFN
GTVGVVTSLDSEEQRLTVLTDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAK
KLVVLVGSRKAIGQAVRTVSAGRRCTSLAYRLAT

Nucleotide


Download         Length: 2265 bp        

>NTDB_id=659519 OG585_RS16175 WP_266624830.1 3566588..3568852(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01340]
ATGTCCAATCAGGTGGGGAACCGGCAGACACAGCTGGCGGTTGTCGAGGGCGTGCTCGAGCGGATCACGTACGCCAACGA
GGAGAACGGGTACACGGTCGCCCGGGTGGACACCGGCCGCGGCGCCGGCGACCTGCTCACCGTCGTGGGCGCACTCCTCG
GTGCCCAGGTGGGGGAATCGCTCCGGATGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTCACGGTGGAG
AACTACACGACCGTCCTCCCCGCCACCGTCCAGGGCATCCGCCGCTACCTCGGCTCCGGCCTCGTCAAGGGCATCGGCCC
GATCTTCGCCGACCGCATCACCCAGCACTTCGGGCTGGACACGCTCCAGATCATCGAGGAGGAGCCGAAGCGGCTCATCG
AGGTCCCCGGCCTCGGTCCCAAGCGCACCAAGAAGATCGCCGAGGCCTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATG
CTCTTCCTCCAGACCGTCGAGGTGTCGACGTCGATCGCGGTGCGCATCTACAAGAAGTACGGCGACGCGTCGATCTCGGT
CGTCAAGAACCAGCCCTACCGCCTGGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGTCCG
TCGGCATCCCGCACGACAGCCCCGAGCGGGTCAAGGCGGGCCTGCAGTACGCCCTGTCGCAGTCCGCCGACCAGGGCCAC
TGCTTCCTCCCCGAGGAGCAACTGATCGCGGACGCGGTGAAGTTGCTCCAGGTGGACACGGGCCTGGTCATCGAGTGCCT
GGCCGAACTGGCGGAGCCGACCGTGGACGAGAACGAACCCGGTGGCGTACGGGAGCCGGGCGTCGTACGCGAGAGGGTCC
CCGGTCCCGACGGCGGCCCCGAGACGGTCACGGCCGTCTACCTGGTCCCCTTCCATCGCGCCGAACTCTCCCTCTCGGCC
CAGCTGTTGCGCCTCCTGCGCACCACCGAGGACCGCATGCCCGGTTTCCACGACGTGGCCTGGGACAAGGCACTGACCTG
GCTGAAGGGGCGTACGGGCGCGGAGTTGGCGCCCGGGCAGGAGGAGGCCGTACGGCTGGCGCTGACCAAGAAGGTCGCGG
TGCTCACCGGGGGCCCCGGCTGCGGCAAGTCGTTCACGGTCCGCTCGATCGTGGAGCTGGCGCGCGCCAAGCGGGCGAAG
GTGGTGCTCGCGGCGCCGACGGGCCGCGCCGCCAAGCGACTCGCCGAGCTGACCGGAGCGGACGCGTCCACCGTGCACCG
GCTCCTGGAGCTCAGGCCGGGCGGTGACGCGGCGTACGACAAGGAACGACCGCTGGACGCCGACCTGGTGGTCGTGGACG
AGGCCTCCATGCTCGACCTCCTCCTCGCCAACAAGCTGGTCAAGGCGGTGCCGCCGGGCGCCCACCTGCTGTTCGTCGGA
GACGTCGACCAGCTCCCCAGCGTCGGTGCCGGCGAGGTCCTGCGCGACCTGCTCGCCGACCAGAGCCCCATCCCCTCGGT
CCGGCTGACCCAGGTCTTCCGCCAGGCCCAGCAGTCCGGAGTGGTGACGAACGCGCACCGGATCAACTCGGGTCAACACC
CCGTCACCGACGGCATGAAGGACTTCTTCCTCTTCGTCGAGGACGAGACCGAGGAGGCCGGGCGGCTCACCGTCGATGTG
GCGGCACGGCGGATTCCGGCCAAGTTCGGGCTCGACCCGCGCCGGGACATCCAGGTGCTGGCCCCCATGCACCGCGGCCC
GGCGGGCGCAGGCACCCTCAACGGCCTGTTGCAGCAGGCGATCACGCCAGGCCGCCCCGACCTCCCCGAAAAACGCTTCG
GCGGCCGTGTCTTCCGGGTCGGCGACAAGGTGACCCAGATCCGCAACAACTACGAAAAAGGCGAGAACGGCGTCTTCAAC
GGCACCGTGGGTGTGGTCACCTCACTCGACTCCGAGGAGCAGCGTCTGACGGTGCTGACGGACGAGGACGAGGAAGTTCC
CTACGACTTCGACGAACTCGACGAGCTGGCCCACGCGTACGCGGTGACGATCCACCGCTCCCAGGGCAGCGAATATCCCG
CGGTGGTGATTCCGGTCACCACCGGCGCGTGGATGATGCTCCAGCGCAATCTGCTCTATACGGCGGTCACCCGGGCGAAG
AAGCTGGTCGTCCTGGTCGGCTCCCGCAAGGCGATCGGCCAGGCGGTCCGCACGGTGTCGGCGGGCCGCCGCTGCACGTC
CCTCGCCTACCGCCTCGCCACGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-242)

AAA domain (AAA_30)

(355-534)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-658)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

Helix-hairpin-helix domain (HHH_5)

(102-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.547

100

0.362