Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG252_RS31945 Genome accession   NZ_CP108354
Coordinates   6871887..6874130 (+) Length   747 a.a.
NCBI ID   WP_329340410.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01352     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6866887..6879130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG252_RS31915 - 6868082..6868300 (-) 219 WP_323186063.1 hypothetical protein -
  OG252_RS31920 (OG252_31920) - 6868513..6868831 (-) 319 Protein_6316 RbsD/FucU domain-containing protein -
  OG252_RS31925 (OG252_31925) - 6869101..6870003 (-) 903 WP_329340405.1 ribokinase -
  OG252_RS31930 (OG252_31930) - 6870000..6870236 (-) 237 WP_266439326.1 hypothetical protein -
  OG252_RS31935 (OG252_31935) - 6870233..6871273 (-) 1041 WP_329340407.1 LacI family DNA-binding transcriptional regulator -
  OG252_RS31940 (OG252_31940) - 6871472..6871837 (+) 366 WP_266439330.1 hypothetical protein -
  OG252_RS31945 (OG252_31945) recD/recD2/recDB 6871887..6874130 (+) 2244 WP_329340410.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG252_RS31950 (OG252_31950) - 6874343..6875632 (+) 1290 WP_266439333.1 citrate synthase -
  OG252_RS31955 (OG252_31955) - 6876608..6876847 (-) 240 WP_266439334.1 heavy-metal-associated domain-containing protein -
  OG252_RS31960 (OG252_31960) - 6876949..6877644 (-) 696 WP_266439335.1 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 80796.51 Da        Isoelectric Point: 6.9346

>NTDB_id=659229 OG252_RS31945 WP_329340410.1 6871887..6874130(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01352]
MAQETGSGERRLAVLDGVLERITYANEENGYTVARVDTGRGAGDLLTVVGALLGAQVGESLRMEGRWGSHPQYGKQFTVE
NYTTVLPATVQGIRRYLGSGLVKGIGPVFADRITQHFGLDTLQVIEEEPKRLIEVPGLGPKRTKKIADAWEEQKAIKEVM
LFLQTVEVSTSIAVRIYKKYGDASISVVKNQPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSTDQGH
CYLPEEQLIADAVKLLQVDTGLVIECLAELAAPREEGEDPGVVREKVPGPDGAPVTAVYLVPFHRAELSLSAQLLRLLRT
DQDRMPGFQDVAWDKAMGWLASRTGTELAPEQEAAVKLALSKKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTG
RAAKRLAELTGADASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSV
GAGEVLRDLLAQGGPIPAVRLTRVFRQAQQSGVVTNAHRINSGQHPVTDGMKDFFLFVEDDTEEVGRLTVDVAARRIPAK
FGLDPRRDVQVLAPMHRGPAGAGNLNGLLQQAITPGRPELPEKRFGGRVFRVGDKVTQIRNNYEKGTNGVFNGTVGVVTS
LDPVDQRLTVLTDEDEEVPYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGS
RKAIGQAVRTVSAGRRCTALDFRLSGL

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=659229 OG252_RS31945 WP_329340410.1 6871887..6874130(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01352]
ATGGCTCAGGAAACGGGGAGCGGGGAGCGGCGACTCGCCGTGCTCGACGGCGTACTGGAGCGGATCACGTACGCCAACGA
GGAGAACGGCTACACGGTCGCTCGGGTCGACACCGGCCGAGGCGCCGGCGACCTCCTGACGGTCGTCGGTGCGCTGCTCG
GCGCCCAGGTCGGCGAGTCCCTGCGGATGGAGGGGCGTTGGGGCTCGCATCCGCAGTACGGCAAGCAGTTCACCGTCGAG
AACTACACGACCGTCCTCCCGGCCACCGTCCAGGGCATCCGCCGCTACCTCGGCTCGGGTCTGGTCAAGGGCATCGGCCC
GGTCTTCGCCGACCGCATCACCCAGCACTTCGGCCTGGACACCCTCCAGGTCATCGAGGAGGAGCCCAAGCGCCTCATCG
AGGTCCCGGGCCTGGGCCCCAAGCGCACCAAGAAGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATG
CTCTTCCTCCAGACCGTCGAGGTGTCCACGTCCATCGCGGTCCGCATCTACAAGAAGTACGGCGACGCCTCCATCTCCGT
GGTGAAGAACCAGCCCTACCGGCTGGCCTCCGACGTCTGGGGCATCGGGTTCCTCACCGCCGACAAGATCGCCCAGTCCG
TCGGCATCCCGCACGACAGCCCGGAGCGCGTCAAGGCGGGCCTCCAGTACGCCCTTTCGCAGTCCACCGACCAGGGCCAC
TGCTACCTCCCCGAGGAACAGCTGATCGCCGACGCGGTCAAGCTCCTCCAGGTCGACACCGGCCTGGTCATCGAGTGCCT
CGCCGAGCTCGCGGCACCCCGGGAGGAGGGCGAGGACCCAGGGGTCGTGCGGGAGAAGGTGCCCGGTCCGGACGGCGCCC
CCGTGACCGCGGTCTATCTCGTCCCCTTCCACCGCGCCGAACTCTCCCTCTCCGCCCAGCTGTTGCGTCTGCTGCGCACC
GACCAGGACCGGATGCCCGGCTTCCAGGACGTGGCCTGGGACAAGGCGATGGGCTGGCTCGCCTCGCGCACCGGGACCGA
GCTCGCCCCCGAGCAGGAGGCCGCCGTCAAGCTGGCGCTCAGCAAGAAGGTCGCCGTCCTCACCGGCGGCCCCGGCTGCG
GCAAGTCCTTCACGGTCCGCTCGATCGTGGAGCTGGCCCGCGCCAAGAAGGCCAAGGTCGTGCTCGCCGCCCCCACCGGC
CGTGCCGCCAAGCGCCTGGCAGAGCTCACCGGCGCCGACGCCTCCACCGTCCACCGCCTGCTGGAGCTGAAGCCCGGCGG
CGACGCGGCCTACGACAAGGACCGCCCGCTGGACGCGGACCTGGTGGTGGTCGACGAGGCCTCGATGCTCGACCTGCTGC
TCGCGAACAAGCTGGTGAAGGCGGTGCCCCCGGGCGCCCATCTCCTCTTCGTCGGGGACGTCGACCAGCTTCCCAGCGTC
GGCGCCGGCGAGGTGCTGCGCGACCTGCTCGCCCAGGGCGGCCCGATCCCGGCCGTGCGCCTCACGCGCGTGTTCCGCCA
GGCCCAGCAGTCCGGCGTCGTGACCAACGCGCACCGGATCAACTCCGGGCAGCACCCCGTCACCGACGGCATGAAGGACT
TCTTCCTCTTCGTCGAGGACGACACGGAGGAGGTCGGCCGGCTCACCGTGGACGTGGCGGCACGGCGGATTCCGGCCAAG
TTCGGCCTCGACCCCCGCCGGGACGTCCAGGTGCTCGCGCCCATGCACCGCGGCCCCGCCGGCGCGGGCAACCTCAACGG
TCTGCTCCAGCAGGCCATCACCCCGGGCCGCCCCGAACTGCCGGAGAAGAGGTTCGGCGGCAGGGTCTTCCGGGTCGGCG
ACAAGGTCACCCAGATTCGCAACAATTACGAGAAGGGCACCAACGGTGTCTTCAACGGCACCGTGGGCGTGGTCACCTCG
CTCGACCCGGTCGACCAGCGCCTCACGGTGCTGACCGACGAGGACGAGGAGGTGCCGTACGAATTCGACGAACTGGACGA
ACTGGCCCACGCGTACGCGGTGACCATCCACCGTTCCCAGGGGAGCGAGTATCCGGCCGTGGTGATCCCGGTCACCACCA
GTGCCTGGATGATGCTCCAGCGGAACCTGCTGTACACGGCGGTCACCCGGGCCAAGAAGCTGGTCGTCCTCGTCGGTTCA
CGCAAAGCGATCGGCCAGGCGGTGCGCACGGTGTCCGCGGGACGCCGCTGCACGGCACTCGACTTCCGGCTCTCGGGACT
GTGA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-650)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(670-718)

AAA domain (AAA_30)

(347-526)

Helix-hairpin-helix domain (HHH_5)

(102-151)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.705

100

0.363