Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG548_RS28405 Genome accession   NZ_CP108350
Coordinates   6401746..6403974 (+) Length   742 a.a.
NCBI ID   WP_329547498.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01356     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6396746..6408974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG548_RS28390 (OG548_28370) - 6397038..6398984 (-) 1947 WP_329547495.1 substrate-binding domain-containing protein -
  OG548_RS28395 (OG548_28375) - 6398974..6400497 (-) 1524 WP_329547496.1 sugar ABC transporter ATP-binding protein -
  OG548_RS28400 (OG548_28380) - 6400560..6401576 (-) 1017 WP_329547497.1 LacI family DNA-binding transcriptional regulator -
  OG548_RS28405 (OG548_28385) recD/recD2/recDB 6401746..6403974 (+) 2229 WP_329547498.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG548_RS28410 (OG548_28390) - 6404237..6405526 (+) 1290 WP_266461889.1 citrate synthase -
  OG548_RS28415 (OG548_28395) - 6406094..6408358 (-) 2265 WP_329547499.1 heavy metal translocating P-type ATPase -
  OG548_RS28420 (OG548_28400) - 6408460..6408699 (-) 240 WP_266461894.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 80362.00 Da        Isoelectric Point: 6.7891

>NTDB_id=659044 OG548_RS28405 WP_329547498.1 6401746..6403974(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01356]
MSQLAVLEGVLERITYANEENGYTVARVDTGRGGGDLLTVVGSLLGAQVGESLRMEGRWGSHPQFGKQFTVENYTTLLPA
TVQGIRRYLGSGLVKGIGPVFADRITQHFGLDTLQIIEEEPKRLIEVPGLGPKRTKKIADAWEEQKAIKEVMLFLQSVEV
STSIAVRIYKKYGDASISVVKNQPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSTDQGHCYLPEERL
IADAVKLLQVDTGLVIECLAELAAPAEEGEDPGVVREKVPGPDGGDPVTAIYLVPFHRAELSLSAQLLRLLRTDQDRMPG
FHDVAWDKALAWLKGRTGTELAPEQEEAVRLALTKKVAVLTGGPGCGKSFTVRSIVELARAKRAKVVLAAPTGRAAKRLA
ELTGAEASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLR
DLLADGGPVPAVRLTQVFRQAQKSGVVTNAHRINSGQHPHTENMKDFFLFVEDDTEEAGRLTVDVAARRIPAKFGLDPRR
DVQVLAPMHRGPAGAGALNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGKNGVFNGTVGVVTSLDAEEQR
LTVLTDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQA
VRTVSAGRRCTALDFRLAGAHL

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=659044 OG548_RS28405 WP_329547498.1 6401746..6403974(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01356]
ATGTCTCAGCTGGCTGTCCTGGAGGGCGTACTCGAGCGGATCACGTACGCCAACGAGGAGAACGGGTACACGGTCGCGCG
GGTCGACACAGGGCGCGGCGGCGGCGACCTGCTCACCGTTGTCGGCTCGCTGCTCGGCGCGCAGGTGGGGGAGTCCCTGC
GCATGGAGGGCCGCTGGGGCTCCCATCCGCAGTTCGGCAAGCAGTTCACGGTGGAGAACTACACGACACTGCTGCCGGCC
ACCGTCCAGGGCATCCGCCGCTATCTCGGATCGGGCCTGGTCAAGGGCATCGGCCCGGTCTTCGCCGACCGGATCACCCA
GCACTTCGGGCTGGACACCCTGCAGATCATCGAGGAGGAGCCGAAGCGGCTCATCGAGGTCCCCGGGCTCGGCCCCAAGC
GCACCAAGAAGATCGCCGACGCCTGGGAGGAACAGAAGGCGATCAAGGAGGTCATGCTCTTCCTCCAGTCCGTCGAGGTG
TCCACGTCGATCGCGGTCCGCATCTACAAGAAGTACGGCGACGCGTCGATCTCGGTGGTCAAGAACCAGCCCTACCGGCT
CGCGTCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGTCCGTCGGCATACCGCACGACAGCCCGG
AGCGCGTCAAGGCCGGTCTCCAGTACGCCCTTTCGCAGTCCACCGACCAGGGCCACTGCTATCTCCCCGAGGAGCGCCTG
ATCGCGGACGCCGTGAAGCTCCTCCAGGTGGACACGGGCCTTGTCATCGAGTGCCTCGCGGAGCTGGCGGCACCGGCCGA
AGAGGGCGAGGACCCCGGTGTCGTACGGGAGAAGGTGCCGGGCCCGGACGGCGGCGACCCGGTGACGGCCATCTACCTGG
TCCCCTTCCACCGCGCCGAACTCTCCCTGTCCGCCCAGCTGTTGCGCCTCCTGCGCACCGATCAGGACCGGATGCCCGGC
TTCCATGACGTGGCCTGGGACAAGGCACTTGCCTGGCTGAAGGGGCGTACGGGCACGGAGTTGGCGCCCGAGCAGGAGGA
GGCGGTCCGGCTCGCGCTCACCAAGAAGGTCGCCGTGCTCACCGGCGGCCCCGGCTGCGGCAAGTCCTTCACGGTCCGCT
CGATCGTGGAACTGGCGCGCGCCAAGCGGGCGAAGGTCGTCCTGGCGGCGCCGACGGGACGCGCAGCCAAGCGCCTCGCC
GAGCTGACCGGGGCCGAGGCCTCCACCGTGCACCGGCTCCTGGAGCTGAAGCCGGGCGGCGACGCGGCGTACGACAAGGA
CCGGCCGCTGGACGCCGACCTGGTGGTCGTGGACGAGGCCTCGATGCTCGACCTGCTCCTCGCCAACAAGCTGGTCAAGG
CGGTGCCTCCGGGCGCGCATCTGCTGTTCGTGGGAGATGTCGACCAGCTCCCCAGCGTCGGCGCCGGCGAGGTGCTGCGC
GATCTGCTCGCCGACGGCGGCCCGGTCCCGGCGGTCCGCCTCACCCAGGTCTTCCGGCAGGCCCAGAAGTCCGGGGTGGT
GACGAACGCGCACCGGATCAACTCGGGGCAGCACCCGCACACGGAGAACATGAAGGACTTCTTTCTCTTCGTCGAGGACG
ACACCGAGGAGGCGGGACGGCTCACGGTGGACGTGGCGGCGCGGCGGATTCCGGCCAAGTTCGGGCTCGACCCGCGCCGC
GATGTCCAGGTCCTCGCGCCGATGCACCGGGGCCCGGCGGGCGCGGGCGCCCTCAACGGCCTCCTCCAGCAGGCCATCAC
ACCCGCCCGCCCTGACCTCCCCGAAAAGCGCTTCGGAGGCCGCGTCTTCCGCGTCGGCGACAAGGTCACCCAGATTCGCA
ACAATTACGAGAAGGGCAAGAACGGTGTCTTCAACGGCACCGTGGGCGTCGTCACCTCGCTGGACGCGGAGGAGCAGCGC
CTGACCGTGCTGACCGACGAGGACGAGGAGGTGCCGTACGACTTCGACGAACTCGACGAGCTGGCCCACGCGTACGCCGT
GACGATCCACCGCTCCCAGGGCAGCGAGTACCCGGCGGTGGTGATCCCGGTCACCACGGGCGCGTGGATGATGCTCCAGC
GCAACCTCCTCTACACGGCCGTCACCCGCGCGAAGAAGCTGGTCGTCCTCGTCGGCTCCCGCAAGGCGATAGGCCAGGCG
GTCCGCACGGTCTCCGCCGGACGGCGGTGCACGGCCCTGGACTTCCGCCTGGCAGGGGCACATCTCTGA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(578-643)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-711)

AAA domain (AAA_30)

(340-520)

Helix-hairpin-helix domain (HHH_5)

(94-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.658

100

0.365