Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG303_RS33425 Genome accession   NZ_CP108316
Coordinates   7299051..7300784 (-) Length   577 a.a.
NCBI ID   WP_405873111.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00005     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7294051..7305784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG303_RS33410 (OG303_33375) - 7294996..7295661 (-) 666 WP_405873107.1 hypothetical protein -
  OG303_RS33415 (OG303_33380) - 7295763..7297064 (+) 1302 WP_405873108.1 RNA polymerase sigma factor -
  OG303_RS33420 (OG303_33385) rcrQ 7297120..7299051 (-) 1932 WP_405873110.1 ABC transporter ATP-binding protein Regulator
  OG303_RS33425 (OG303_33390) rcrP 7299051..7300784 (-) 1734 WP_405873111.1 ABC transporter ATP-binding protein Regulator
  OG303_RS33430 (OG303_33395) - 7300900..7302354 (-) 1455 WP_405873113.1 FGGY family carbohydrate kinase -
  OG303_RS33435 (OG303_33400) - 7302529..7302834 (-) 306 WP_405873114.1 YtxH domain-containing protein -
  OG303_RS33455 (OG303_33420) - 7303613..7303891 (-) 279 WP_405873115.1 Atu4866 domain-containing protein -
  OG303_RS33460 (OG303_33425) - 7304240..7304998 (+) 759 WP_405873116.1 Atu4866 domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62645.89 Da        Isoelectric Point: 6.4054

>NTDB_id=658869 OG303_RS33425 WP_405873111.1 7299051..7300784(-) (rcrP) [Streptomyces sp. NBC_00005]
MLIRLLRTYLRPYRKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLAQVVCNIGAVYYGA
RTASALGRDIRASVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPTLGICVTLIVRRLRPLFRAMQVRLDTVNRVLREQITGNRVIRAFVRDEYEKDRFRKANTDLTEMQLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRINSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLGTSSSVVP
PVAPVTELRRHGHLEIRGAGFRYPGAEEPVLKGIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGTDVS
TLEPKLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDAELWQALEVAQAKGFVEELENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAEETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=658869 OG303_RS33425 WP_405873111.1 7299051..7300784(-) (rcrP) [Streptomyces sp. NBC_00005]
GTGCTCATACGACTTCTGCGGACCTACCTCAGGCCCTACCGGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACTCTGAACGCGCACATCATCGACAACGGTGTCGTGAAGGGTGACACCGGCTACA
TCCTCTCCTTCGGCGCCCTGATGATCGGCATCTCGCTGGCTCAGGTCGTGTGCAACATCGGTGCCGTGTACTACGGCGCC
CGGACCGCGTCGGCGCTCGGCCGGGACATCCGGGCGTCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCCCGGGAGGTCGG
CCACTTCGGCGCTCCCTCGCTGATCACCCGTACGACCAATGACGTACAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGTCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGCGGTGGTGCCGACGCTGGGCATCTGCGTGACGCTGATCGTCCGCCGGCTGCGGCCGCTGTTCCGGGCCATGCA
GGTGCGCCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGGGCCTTCGTGCGGGACG
AGTACGAGAAGGACCGTTTCCGTAAGGCCAACACCGATCTCACCGAGATGCAGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCGGTGGTCTGGTTCGGCGCCCATCGGATCAACAGCGG
CGGGATGCAGATCGGTGATCTGACCGCCTTCCTCGCCTATCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCCCGCGCGGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGGGACCTCGTCCAGCGTGGTGCCG
CCCGTCGCGCCCGTCACGGAGCTGCGCCGGCACGGGCATCTGGAGATCCGCGGGGCCGGGTTCCGCTATCCGGGCGCCGA
GGAGCCCGTGCTCAAGGGGATCGACCTGGTGGCGCGCCCCGGCGAGGTGACCGCGGTCATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTGCTCGGGCTGGTCCCGCGCCTGTTCGACGCGACCGACGGGGAGGTGCTCGTCGACGGCACGGACGTGTCG
ACCCTCGAACCGAAGCTGCTGGCCAAGACGGTCGGGCTGGTGCCGCAGAAGCCGTATCTGTTCGCGGGGACGGTGGCGAC
CAACCTGCGCTACGGCAATCCGGACGCCACGGACGCGGAGCTGTGGCAGGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAGGAGCTGGAGAACGGCCTCGACTCCCCCATCGCGCAGGGCGGTACGAACGTCTCGGGTGGTCAGCGGCAGCGGCTC
GCCATCGCCCGGACCCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGCGACCGA
CGCGGCGCTGCGTGCGGCGCTGGCCGAGGAGACCGCGGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACGGGGCGCCATCACGAACTGATGGCCGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.243

100

0.395