Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OHU89_RS19185 Genome accession   NZ_CP108302
Coordinates   4060997..4063231 (-) Length   744 a.a.
NCBI ID   WP_405644473.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4055997..4068231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU89_RS19170 (OHU89_19150) - 4056243..4056482 (+) 240 WP_266892149.1 heavy-metal-associated domain-containing protein -
  OHU89_RS19175 (OHU89_19155) - 4056562..4058781 (+) 2220 WP_405644469.1 heavy metal translocating P-type ATPase -
  OHU89_RS19180 (OHU89_19160) - 4059474..4060763 (-) 1290 WP_405644471.1 citrate synthase -
  OHU89_RS19185 (OHU89_19165) recD/recD2/recDB 4060997..4063231 (-) 2235 WP_405644473.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OHU89_RS19190 (OHU89_19170) - 4063279..4063644 (-) 366 WP_405644475.1 hypothetical protein -
  OHU89_RS19195 (OHU89_19175) - 4063854..4064870 (+) 1017 WP_405644476.1 LacI family DNA-binding transcriptional regulator -
  OHU89_RS19200 (OHU89_19180) - 4064867..4066396 (+) 1530 WP_405644478.1 sugar ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 80584.29 Da        Isoelectric Point: 6.8319

>NTDB_id=658396 OHU89_RS19185 WP_405644473.1 4060997..4063231(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00019]
MAQGLAVLEGVLERITYANEENGYTVARVDTGRGGGDLLTVVGALLGAQVGESLRMEGRWGSHPQYGKQFTVENYTTVLP
ATVQGIRRYLGSGLVKGIGPVFADRITQHFGLDTLQIIEEEPKRLIEVPGLGPKRTKKIADAWDEQKAIKEVMLFLQTVE
VSTSIAVRIYKKYGDASISVVKNQPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQATDQGNCYLPEEK
LIADAVKLLQVDTGLVIECLAELAEPSEEGEDPGVVREKVPGEHGEPVTAIYLVPFHRAELSLSAQLLRLLRTAEDRMPG
FHDVAWDKALGWLKDRTGADLAPEQEAAVKLALTKKVAVLTGGPGCGKSFTVRSIVELARARKARVVLAAPTGRAAKRLA
ELTGTEASTVHRLLELKPGGDAAYDKDRPLQADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLR
DLLADGSPIPAVRLTRVFRQAQQSGVVTNAHRINSGQHPVTDGMKDFFLFVEDDTEEAGRLTVDVAARRIPAKFGLDPRR
DVQVLAPMHRGPAGAGNLNGLLQQAITPGRPDVAEKRFGGRVFRVGDKVTQIRNNYEKGKNGVFNGTVGVVTSLDPVDQR
LTVLTDEDEEVPYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQA
VRTVSAGRRCTALDFRLSPGPLRE

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=658396 OHU89_RS19185 WP_405644473.1 4060997..4063231(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00019]
ATGGCTCAGGGGCTCGCCGTACTCGAAGGCGTACTGGAACGGATCACGTACGCCAACGAGGAGAACGGCTACACGGTCGC
CCGTGTCGACACGGGCAGGGGCGGCGGCGACCTCCTCACCGTCGTCGGCGCGCTGCTCGGCGCTCAGGTCGGTGAGTCCC
TCCGGATGGAGGGGCGTTGGGGCTCGCACCCCCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACGACCGTCCTGCCG
GCCACCGTGCAGGGCATCCGCCGCTACCTCGGCTCGGGCCTCGTCAAGGGCATCGGGCCCGTCTTCGCCGACCGCATCAC
CCAGCACTTCGGCCTGGACACCCTGCAGATCATCGAGGAGGAGCCCAAGCGGCTCATCGAGGTCCCCGGGCTCGGCCCGA
AGCGGACCAAGAAGATCGCCGACGCCTGGGACGAACAGAAGGCGATCAAGGAGGTGATGCTCTTCCTCCAGACCGTGGAG
GTCTCCACGTCCATCGCCGTGCGGATCTACAAGAAGTACGGCGACGCCTCCATCTCCGTCGTCAAGAACCAGCCCTACCG
CCTCGCCTCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGTCCGTCGGCATCCCGCACGACAGCC
CGGAGCGCGTCAAGGCGGGCCTGCAGTACGCCCTTTCGCAGGCCACCGACCAGGGCAACTGCTACCTCCCCGAGGAGAAG
CTGATCGCCGACGCGGTCAAGCTCCTCCAGGTCGACACCGGTCTCGTCATCGAGTGCCTCGCCGAACTGGCCGAGCCTTC
CGAGGAAGGCGAAGACCCCGGTGTCGTACGGGAGAAGGTGCCCGGCGAGCACGGCGAGCCGGTCACCGCGATCTACCTCG
TCCCCTTCCACCGAGCCGAACTCTCCCTCTCCGCCCAGCTGTTGCGCCTCCTGCGCACGGCCGAGGACCGCATGCCGGGC
TTCCACGACGTGGCCTGGGACAAGGCGCTCGGCTGGCTGAAGGACCGTACGGGCGCCGATCTCGCCCCCGAGCAGGAGGC
CGCCGTCAAGCTCGCGCTCACCAAGAAGGTCGCCGTCCTCACCGGCGGCCCCGGCTGCGGCAAGTCCTTCACGGTCCGTT
CGATCGTGGAGCTGGCGCGCGCCAGGAAGGCCAGGGTCGTCCTCGCCGCCCCCACGGGGCGTGCCGCAAAGCGCCTCGCC
GAACTCACCGGTACCGAGGCCTCCACCGTCCACCGCCTCCTGGAGCTGAAGCCGGGCGGGGACGCGGCGTACGACAAGGA
CCGTCCCCTCCAGGCGGACCTGGTGGTGGTGGACGAGGCGTCGATGCTGGACCTGCTGCTCGCCAACAAGCTGGTGAAGG
CGGTACCCCCGGGCGCGCACCTCCTCTTCGTCGGGGACGTCGACCAACTCCCCAGCGTCGGAGCGGGGGAGGTCCTGCGC
GACCTGCTCGCCGACGGCAGCCCCATCCCCGCCGTACGTCTCACGCGCGTGTTCCGTCAGGCCCAGCAGTCCGGTGTGGT
CACCAACGCCCACCGGATCAACTCCGGGCAGCACCCCGTCACCGACGGCATGAAGGACTTCTTCCTCTTCGTCGAGGACG
ACACGGAGGAGGCGGGCCGGCTCACGGTCGACGTCGCGGCCCGGCGAATTCCGGCCAAGTTCGGACTCGACCCGCGCCGC
GACGTCCAGGTCCTCGCCCCCATGCACCGAGGCCCCGCAGGCGCCGGAAACCTCAACGGCCTGTTGCAGCAGGCCATCAC
GCCAGGCCGCCCCGACGTGGCGGAGAAGCGGTTCGGCGGGAGGGTCTTCCGCGTCGGCGACAAGGTCACCCAGATTCGCA
ACAATTACGAGAAGGGCAAGAACGGTGTCTTCAACGGCACCGTGGGCGTCGTCACCTCGCTCGACCCGGTCGACCAGCGC
CTCACGGTGCTGACGGACGAGGATGAGGAGGTTCCGTACGAGTTCGATGAACTGGACGAACTGGCCCATGCGTACGCGGT
GACCATTCACCGTTCCCAGGGCAGTGAATATCCCGCCGTGGTGATCCCCGTCACCACGGGAGCATGGATGATGCTTCAAC
GGAATCTGCTCTACACGGCGGTCACCCGGGCCAAGAAGCTGGTCGTCCTCGTCGGTTCGCGCAAGGCGATCGGTCAGGCG
GTGCGCACGGTGTCGGCGGGACGGCGTTGTACGGCCCTCGACTTCCGCCTCTCACCGGGCCCCCTCCGGGAGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(341-519)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-711)

Helix-hairpin-helix containing domain (HHH_RecD2)

(145-235)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(578-643)

Helix-hairpin-helix domain (HHH_5)

(95-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.896

100

0.36