Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG235_RS36560 Genome accession   NZ_CP108298
Coordinates   8252786..8254720 (-) Length   644 a.a.
NCBI ID   WP_405961182.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00024     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 8247786..8259720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG235_RS36550 (OG235_36520) dnaG 8249107..8251008 (+) 1902 WP_327729805.1 DNA primase -
  OG235_RS36555 (OG235_36525) - 8251223..8252545 (+) 1323 WP_327729806.1 RNA polymerase sigma factor -
  OG235_RS36560 (OG235_36530) rcrQ 8252786..8254720 (-) 1935 WP_405961182.1 ABC transporter ATP-binding protein Regulator
  OG235_RS36565 (OG235_36535) rcrP 8254720..8256453 (-) 1734 WP_327729808.1 ABC transporter ATP-binding protein Regulator
  OG235_RS36570 (OG235_36540) - 8256670..8258124 (-) 1455 WP_327729809.1 FGGY family carbohydrate kinase -
  OG235_RS36575 (OG235_36545) - 8258194..8258499 (-) 306 WP_326582959.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 69528.80 Da        Isoelectric Point: 5.0551

>NTDB_id=658341 OG235_RS36560 WP_405961182.1 8252786..8254720(-) (rcrQ) [Streptomyces sp. NBC_00024]
MAGPLARMAGAGAPDQRSMDFKGSGKRLLAQFRPERFTMYAMIVCAVLSVGLSVLGPWILGRATDLVFAGVVGREMPAGQ
TKAEVLEGLRQRGDGGVADMLQGTDFTPGEGIDFDAVGGVLLVALGIFLVAGLLMAAATRLSNRAINRTVYHMREDLQAK
LSRLPLSYFDRRQRGEVLSRATNDIDNIGQTLQQSMGQLVNSLLTIIGVLVMMFWVSPLLALVALVTVPVSFVVATRVGK
RSQPHFVAQWRVTGKLNAHIEEMYTGHTLVKVFGRQEESAQQFAEENERLYEAGFKAQFNSGIMQPLMFFVSNINYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADAVPGVRPEELRGRVALE
GVSFRYDADKPLIEDLSLVVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDVASMSRDELRDGIGMVLQDT
WLFGGSIAENIAYGASAARKVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVL
DEATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGTHAELLAADGAYARLYKAQFAEAV
AEVD

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=658341 OG235_RS36560 WP_405961182.1 8252786..8254720(-) (rcrQ) [Streptomyces sp. NBC_00024]
ATGGCCGGGCCGTTGGCACGGATGGCGGGGGCCGGAGCCCCCGATCAGCGCTCCATGGACTTCAAGGGGTCCGGGAAACG
GCTGCTCGCCCAGTTCAGGCCCGAGCGGTTCACGATGTACGCGATGATCGTGTGCGCCGTGCTCAGCGTGGGTCTCTCGG
TGCTCGGGCCGTGGATCCTCGGCAGGGCGACCGACCTCGTCTTCGCCGGTGTCGTCGGGCGGGAGATGCCGGCGGGGCAG
ACGAAGGCCGAGGTGCTGGAAGGGCTGCGGCAGCGCGGCGACGGCGGGGTCGCCGACATGCTGCAGGGCACGGACTTCAC
GCCGGGCGAGGGCATCGATTTCGACGCCGTCGGCGGCGTGCTGCTGGTTGCCCTCGGCATCTTCCTGGTCGCCGGGCTGC
TGATGGCGGCGGCCACGCGGCTCTCCAACCGGGCCATCAACCGGACCGTCTACCACATGCGCGAGGATCTCCAGGCGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACCGGCGGCAGCGCGGTGAGGTGCTGAGCCGGGCGACCAACGACATCGACAA
CATCGGCCAGACGCTCCAGCAGTCGATGGGCCAGCTCGTCAACTCGCTCCTCACCATCATCGGTGTGCTGGTGATGATGT
TCTGGGTGTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACCGTACCGGTGTCGTTCGTGGTCGCCACGCGCGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGGCGCAGTGGCGGGTCACCGGGAAGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CACGCTCGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGCAGCAGTTCGCCGAGGAGAACGAACGGCTGTACGAGGCCG
GGTTCAAGGCCCAGTTCAACAGCGGGATCATGCAGCCGCTGATGTTCTTCGTGTCGAACATCAACTATGTGCTGGTCGCG
GTGGTGGGCGGACTGCGGGTCGCGTCCGGCACGCTGTCCATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTGGCGTCCATGGCGAACCTCGTGCAGTCGGGGGTCGCCTCCGCCGAGCGGATCTTCGAAC
TGCTCGACGCGGAGGAGCAGGAGGCCGACGCCGTGCCCGGGGTGCGGCCGGAGGAGCTGCGGGGGCGGGTGGCGCTGGAG
GGGGTGTCCTTCCGGTACGACGCCGACAAGCCGCTGATCGAGGATCTGTCGCTGGTGGTGGAGCCGGGGCACACCGTGGC
GATCGTGGGGCCGACGGGGGCCGGGAAGACGACCCTGGTGAACCTGTTGATGCGGTTCTACGAGGTCACGGGTGGGCGCA
TCACCCTCGACGGGGTCGATGTCGCGTCCATGTCCCGGGACGAACTCCGGGACGGGATAGGGATGGTGCTTCAGGACACC
TGGCTGTTCGGGGGGAGCATCGCGGAGAACATCGCGTACGGGGCGTCCGCCGCGCGGAAGGTCACGCGGGGGGAGATCGA
GGAGGCGGCGCGGGCCGCCCATGCGGACCGGTTCATCCGGACGCTGCCGGACGGGTACGACACCGTGATCGACGACGAGG
GGACCGGGGTGAGCGCGGGTGAGAAGCAGCTCATCACGATCGCTCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTGCTG
GACGAGGCGACGAGTTCGGTCGACACGCGCACCGAGGTGTTGATCCAGAAGGCCATGGCGAAGTTGGCGCATGGGCGTAC
GTCGTTCGTGATCGCGCATCGGTTGTCGACGATTCGGGATGCGGACACGATTCTGGTGATGGAGAACGGGGCGATCGTGG
AGCAGGGGACGCACGCGGAGTTGTTGGCCGCGGACGGGGCGTACGCGCGGCTGTACAAGGCGCAGTTCGCGGAGGCGGTT
GCGGAGGTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.224

96.894

0.39