Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG885_RS30705 Genome accession   NZ_CP108293
Coordinates   6834241..6835974 (-) Length   577 a.a.
NCBI ID   WP_405737527.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00028     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6829241..6840974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG885_RS30695 (OG885_30635) - 6830936..6832237 (+) 1302 WP_405737525.1 RNA polymerase sigma factor -
  OG885_RS30700 (OG885_30640) rcrQ 6832313..6834241 (-) 1929 WP_405737526.1 ABC transporter ATP-binding protein Regulator
  OG885_RS30705 (OG885_30645) rcrP 6834241..6835974 (-) 1734 WP_405737527.1 ABC transporter ATP-binding protein Regulator
  OG885_RS30710 (OG885_30650) - 6836120..6837559 (-) 1440 WP_405737528.1 FGGY-family carbohydrate kinase -
  OG885_RS30715 (OG885_30655) - 6837603..6837908 (-) 306 WP_405737529.1 YtxH domain-containing protein -
  OG885_RS30735 (OG885_30675) - 6838571..6839323 (+) 753 WP_405737530.1 response regulator transcription factor -
  OG885_RS30740 (OG885_30680) - 6839320..6840750 (+) 1431 WP_405737531.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62472.69 Da        Isoelectric Point: 5.3916

>NTDB_id=658259 OG885_RS30705 WP_405737527.1 6834241..6835974(-) (rcrP) [Streptomyces sp. NBC_00028]
MLIRLLRTYLRPYKKAITVLVLFQFLQTCATLYLPTLNADIIDKGVVNGDTGYILSFGALMIGISLAQVVCNIGAVYYGA
RTAAALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPTLGVCVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDEYEEERFRKANGDLTDMSLATGRMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PVAPVVELRRHGHLEIRGAGFRYPGAEEPVLKAVELVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVDGVPVA
DVEPTLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAAETSEATVVIVAQRVATIRDADRIVVLDEGRVVGTGTHRELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=658259 OG885_RS30705 WP_405737527.1 6834241..6835974(-) (rcrP) [Streptomyces sp. NBC_00028]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAAGAAAGCCATCACCGTCCTGGTGCTGTTCCAGTTCCTCCA
GACCTGCGCCACCCTCTACCTGCCCACGCTCAACGCCGACATCATCGACAAGGGCGTGGTGAACGGGGACACGGGCTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGGATCTCGCTGGCGCAGGTGGTGTGCAACATCGGGGCCGTCTACTACGGCGCC
CGAACGGCCGCGGCGCTCGGGCGGGACGTGCGGGCCGCGGTCTTCGACCGGGTGCAGTCGTTCTCGGCCCGCGAGGTGGG
CCACTTCGGCGCGCCCTCGCTGATCACCCGGACCACGAACGACGTCCAGCAGGTGCAGATGCTGGCGCTGATGACGTTCA
CCCTGATGGTGTCGGCGCCCATCATGTGCGTGGGCGGCATCGTCCTCGCCCTCGGCCTGGACGTGCCGCTGTCGGCGGTG
CTGGTCGCCGTCGTACCGACGCTGGGCGTCTGCGTGACCCTGATCGTACGGCGGCTGCGACCGCTGTTCCGGACGATGCA
GGTGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGGGACG
AGTACGAGGAGGAGCGCTTCCGCAAGGCGAACGGCGACCTCACCGACATGTCGCTGGCCACCGGCAGGATGCTCGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCGATCGCCGTCGTGTGGTTCGGCGCCCATCGCATTGACAGCGG
CGGGATGCAGATCGGTGATCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCCCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTCGACACGTCGTCGAGCGTGGTGCCG
CCGGTGGCGCCGGTCGTGGAGCTGCGCCGGCACGGACACCTGGAGATCCGGGGCGCGGGCTTCCGCTACCCCGGGGCCGA
GGAGCCGGTGCTCAAGGCGGTCGAACTGGTGGCCCGGCCCGGTGAGGTGACGGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCGACGCTCCTTGGGCTGGTGCCCCGGCTGTTCGACGCGACCGAGGGCGAGGTGCTGGTCGACGGGGTCCCGGTCGCG
GACGTCGAGCCGACGCTGCTGGCGAAGACCGTCGGGCTCGTGCCGCAGAAGCCGTATCTCTTCGCCGGGACCGTGGCGAC
CAACCTGCGCTACGGCAACCCGGACGCCACGGACGAGGAGCTGTGGCACGCCCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAGGGTCTCGAGAACGGCCTCGACTCCCCCATCGCCCAGGGCGGGACGAACGTCTCCGGTGGTCAGCGGCAGCGGCTC
GCGATCGCCCGGACGCTGGTCCAGCGGCCCGAGATCTATCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCGCTGCGCGCGGCGCTCGCGGCGGAGACGTCGGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GCGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGAACCCACCGTGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.426

97.747

0.395