Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG438_RS29395 Genome accession   NZ_CP108291
Coordinates   6548706..6550934 (+) Length   742 a.a.
NCBI ID   WP_405925518.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00035     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6543706..6555934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG438_RS29380 (OG438_29355) - 6543997..6545943 (-) 1947 WP_405925515.1 substrate-binding domain-containing protein -
  OG438_RS29385 (OG438_29360) - 6545933..6547456 (-) 1524 WP_405925516.1 sugar ABC transporter ATP-binding protein -
  OG438_RS29390 (OG438_29365) - 6547519..6548535 (-) 1017 WP_405925517.1 LacI family DNA-binding transcriptional regulator -
  OG438_RS29395 (OG438_29370) recD/recD2/recDB 6548706..6550934 (+) 2229 WP_405925518.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG438_RS29400 (OG438_29375) - 6551222..6552511 (+) 1290 WP_266461889.1 citrate synthase -
  OG438_RS29405 (OG438_29380) - 6553054..6555318 (-) 2265 WP_405925519.1 heavy metal translocating P-type ATPase -
  OG438_RS29410 (OG438_29385) - 6555421..6555660 (-) 240 WP_326722986.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 80434.07 Da        Isoelectric Point: 6.7892

>NTDB_id=658070 OG438_RS29395 WP_405925518.1 6548706..6550934(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00035]
MSQLAVLEGVLERITYANEENGYTVARVDTGRGGGDLLTVVGSLLGAQVGESLRMEGRWGSHPQFGKQFTVENYTTLLPA
TVQGIRRYLGSGLVKGIGPVFADRITQHFGLDTLQIIEEEPKRLIEVPGLGPKRTKKIADAWEEQKAIKEVMLFLQTVEV
STSIAVRIYKKYGDASISVVKNQPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSTDQGHCYLPEERL
IADAVKLLQVDTGLVIECLAELAAPAEEGEDPGVVREKVPGPDGGEPVTAIYLVPFHRAELSLSAQLLRLLRTDQDRMPG
FHDVAWDKALAWLKGRTGTELAPEQEEAVRLALTKKVAVLTGGPGCGKSFTVRSIVELARAKRAKVVLAAPTGRAAKRLA
ELTGAEASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLR
DLLADGGPVPAVRLTRVFRQAQQSGVVTNAHRINSGQHPHTENMKDFFLFVEDDTEEAGRLTVDVAARRIPAKFGLDPRR
DVQVLAPMHRGPAGAGALNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGKNGVFNGTVGVVTSLDAEEQR
LTVLTDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQA
VRTVSAGRRCTALDFRLSGAHL

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=658070 OG438_RS29395 WP_405925518.1 6548706..6550934(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00035]
ATGTCTCAGCTGGCTGTCCTGGAGGGCGTACTCGAACGGATCACGTACGCCAACGAGGAGAACGGGTACACGGTCGCGCG
GGTCGACACGGGCCGCGGCGGCGGCGACCTGCTCACCGTCGTCGGCTCGCTGCTCGGCGCGCAGGTGGGGGAGTCCCTGC
GCATGGAGGGCCGCTGGGGCTCCCATCCGCAGTTCGGCAAGCAGTTCACGGTGGAGAACTACACGACGCTGCTGCCGGCC
ACCGTCCAGGGCATCCGCCGCTATCTCGGCTCGGGCCTGGTCAAGGGCATCGGCCCGGTCTTCGCCGACCGGATCACCCA
GCACTTCGGCCTGGACACCCTGCAGATCATCGAGGAGGAGCCGAAGCGGCTCATCGAGGTGCCGGGGCTCGGCCCCAAGC
GCACCAAGAAGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATGCTCTTCCTCCAGACCGTCGAGGTG
TCCACCTCGATCGCGGTCCGCATCTACAAGAAGTACGGCGACGCGTCGATCTCGGTGGTCAAGAACCAGCCCTACCGCCT
CGCGTCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGTCCGTCGGCATACCGCACGACAGCCCGG
AGCGCGTCAAGGCCGGTCTCCAGTACGCACTTTCGCAGTCCACCGACCAGGGCCACTGCTATCTCCCCGAGGAGCGCCTG
ATCGCGGACGCCGTGAAGCTCCTCCAGGTGGACACGGGCCTTGTCATCGAGTGCCTCGCGGAGCTGGCGGCACCGGCCGA
GGAAGGCGAGGACCCCGGTGTCGTACGGGAGAAGGTGCCGGGCCCGGACGGCGGCGAGCCGGTGACGGCCATCTATCTGG
TCCCCTTCCACCGCGCCGAACTCTCCCTCTCCGCCCAGCTGTTGCGCCTCCTGCGCACAGACCAGGACCGGATGCCCGGC
TTCCACGACGTGGCCTGGGACAAGGCCCTCGCCTGGCTGAAGGGGCGTACGGGCACGGAGCTGGCGCCCGAGCAGGAGGA
GGCGGTCCGGCTCGCGCTCACCAAGAAGGTCGCCGTGCTCACCGGCGGCCCAGGCTGCGGCAAGTCGTTCACGGTCCGCT
CGATCGTGGAACTGGCGCGTGCCAAGCGGGCGAAGGTCGTCCTGGCCGCCCCCACGGGGCGCGCCGCCAAGCGGCTCGCC
GAGCTGACCGGGGCCGAGGCGTCCACCGTGCACCGGCTCCTGGAGCTGAAGCCGGGCGGCGACGCGGCGTACGACAAGGA
CCGGCCGCTGGACGCCGACCTGGTGGTCGTGGACGAGGCCTCGATGCTCGACCTGCTCCTCGCAAACAAGCTGGTCAAGG
CGGTGCCCCCGGGCGCCCACCTGCTCTTCGTCGGAGATGTCGACCAGCTCCCCAGCGTCGGCGCCGGCGAGGTGCTGCGC
GATCTGCTCGCCGACGGCGGCCCGGTCCCGGCGGTCCGCCTCACCCGGGTCTTCCGGCAGGCCCAGCAGTCCGGGGTGGT
GACGAACGCGCACCGGATCAACTCCGGGCAGCACCCGCACACGGAGAACATGAAGGACTTCTTCCTCTTCGTCGAGGACG
ACACCGAGGAGGCGGGACGGCTCACGGTGGACGTGGCGGCACGGCGGATTCCGGCCAAGTTCGGGCTCGACCCGCGCCGC
GATGTCCAGGTCCTCGCGCCGATGCACCGGGGCCCGGCGGGCGCGGGCGCCCTCAACGGCCTCCTCCAGCAGGCCATCAC
ACCCGCCCGCCCGGACCTCCCCGAAAAGCGCTTCGGAGGCCGCGTCTTCCGGGTCGGCGACAAGGTCACCCAGATTCGCA
ACAATTACGAGAAGGGCAAGAACGGCGTCTTCAACGGCACCGTGGGCGTCGTCACCTCGCTGGACGCGGAGGAGCAGCGC
CTGACCGTGCTGACCGACGAGGACGAGGAGGTGCCGTACGACTTCGACGAACTCGACGAGCTGGCCCACGCGTACGCGGT
GACGATCCACCGCTCCCAGGGCAGCGAGTACCCGGCGGTGGTGATCCCGGTCACCACGGGCGCGTGGATGATGCTCCAGC
GCAACCTCCTCTACACGGCCGTCACCCGCGCGAAGAAGCTGGTCGTCCTCGTCGGCTCCCGCAAGGCGATAGGCCAGGCG
GTCCGCACGGTCTCCGCCGGACGGCGGTGCACGGCCCTGGACTTCCGGCTGTCGGGGGCACACCTCTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(340-520)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(578-643)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-711)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

Helix-hairpin-helix domain (HHH_5)

(94-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.789

100

0.367