Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   NY40_RS05720 Genome accession   NZ_AP014523
Coordinates   1154298..1154582 (-) Length   94 a.a.
NCBI ID   WP_000413637.1    Uniprot ID   A0AB72ZV75
Organism   Helicobacter pylori NY40     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1149298..1159582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY40_RS05695 (NY40_1152) - 1150615..1150980 (-) 366 Protein_1111 hypothetical protein -
  NY40_RS09280 - 1150973..1151113 (-) 141 WP_000789929.1 hypothetical protein -
  NY40_RS05705 (NY40_1153) - 1151110..1153775 (-) 2666 Protein_1113 VirB4 family type IV secretion/conjugal transfer ATPase -
  NY40_RS05710 (NY40_1155) - 1153775..1154011 (-) 237 WP_039090975.1 hypothetical protein -
  NY40_RS05715 (NY40_1156) comB3 1154023..1154286 (-) 264 WP_001177718.1 hypothetical protein Machinery gene
  NY40_RS05720 (NY40_1157) comB2 1154298..1154582 (-) 285 WP_000413637.1 TrbC/VirB2 family protein Machinery gene
  NY40_RS05725 (NY40_1158) - 1154570..1155058 (-) 489 WP_000571137.1 hypothetical protein -
  NY40_RS05730 (NY40_1159) - 1155051..1155263 (-) 213 WP_227986187.1 hypothetical protein -
  NY40_RS05735 (NY40_1160) - 1155284..1156062 (-) 779 Protein_1119 integrase -
  NY40_RS05740 (NY40_1161) - 1156360..1156641 (+) 282 Protein_1120 R.Pab1 family restriction endonuclease -
  NY40_RS05745 (NY40_1162) csd3 1156855..1158066 (+) 1212 WP_041051092.1 peptidoglycan DD-metalloendopeptidase Csd3 -
  NY40_RS05750 (NY40_1163) - 1158066..1158704 (+) 639 WP_041051094.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10753.05 Da        Isoelectric Point: 10.7837

>NTDB_id=65795 NY40_RS05720 WP_000413637.1 1154298..1154582(-) (comB2) [Helicobacter pylori NY40]
MEKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=65795 NY40_RS05720 WP_000413637.1 1154298..1154582(-) (comB2) [Helicobacter pylori NY40]
ATGGAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment