Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG374_RS15420 Genome accession   NZ_CP108287
Coordinates   3284054..3285787 (+) Length   577 a.a.
NCBI ID   WP_202201657.1    Uniprot ID   A0ABQ3TIL8
Organism   Streptomyces sp. NBC_00040     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3279054..3290787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG374_RS15390 (OG374_15265) - 3280309..3281415 (+) 1107 WP_202201660.1 glutamate--cysteine ligase -
  OG374_RS15410 (OG374_15285) - 3282056..3282361 (+) 306 WP_202201659.1 YtxH domain-containing protein -
  OG374_RS15415 (OG374_15290) - 3282456..3283904 (+) 1449 WP_202201658.1 FGGY family carbohydrate kinase -
  OG374_RS15420 (OG374_15295) rcrP 3284054..3285787 (+) 1734 WP_202201657.1 ABC transporter ATP-binding protein Regulator
  OG374_RS15425 (OG374_15300) rcrQ 3285784..3287706 (+) 1923 WP_202201656.1 ABC transporter ATP-binding protein Regulator
  OG374_RS15430 (OG374_15305) - 3287803..3288324 (+) 522 WP_202201655.1 GNAT family N-acetyltransferase -
  OG374_RS15435 (OG374_15310) - 3288384..3289493 (-) 1110 WP_399543517.1 RNA polymerase sigma factor -
  OG374_RS15440 (OG374_15315) - 3289587..3290189 (+) 603 WP_405814423.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62609.65 Da        Isoelectric Point: 5.6429

>NTDB_id=657940 OG374_RS15420 WP_202201657.1 3284054..3285787(+) (rcrP) [Streptomyces sp. NBC_00040]
MLIRLLRTHLVPYRKPIAVLVLLQLLQTSASLYLPTLNADIIDNGVVNGDTGYILRFGALMLGVSLVQLVCNVGAVYYGA
RTAAAFGRDLRAAIFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVKLSGV
LLAVVPVLGISVGAIVWRTRPLFRQMQTRLDTVNRVLREQITGNRVIRAFVRDAYEKDRFREANADLTGVSMAAGKLLAY
MFPTVIVVVNISSVAVIWFGAMRVDSGGMEIGQLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCGERIQEVLDTDSSVVP
PKDPVRELARRGRLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
ALDPDLLARTVGMVPQKPYLFSGTVASNLRYGRPDASDEELWRALEVAQAKEFVSALEGGLQAPVSQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=657940 OG374_RS15420 WP_202201657.1 3284054..3285787(+) (rcrP) [Streptomyces sp. NBC_00040]
GTGCTCATACGACTTCTGCGGACCCATCTGGTTCCGTACCGGAAACCCATCGCGGTGCTGGTCCTGCTGCAACTGCTGCA
GACCAGCGCCAGCCTCTACCTGCCCACCCTCAACGCCGACATCATCGACAACGGTGTCGTCAACGGGGACACCGGCTACA
TCCTGCGCTTCGGCGCGCTGATGCTCGGTGTCTCCCTCGTCCAGCTCGTCTGCAACGTCGGAGCCGTCTACTACGGCGCC
CGTACGGCCGCGGCCTTCGGCCGGGACCTGCGCGCCGCGATCTTCGACCGTGTGCAGAGCTTCTCGGCGCGGGAGCTCGG
CCAGTTCGGCGCCCCGTCGCTGATCACCCGTACGACGAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACCTTCA
CCCTGATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCTCGCTCGACGTGAAGCTGTCGGGCGTG
CTGCTCGCGGTGGTTCCCGTGCTCGGGATCTCGGTCGGCGCGATCGTCTGGAGGACGCGCCCGCTGTTCCGCCAGATGCA
GACGCGCCTGGACACCGTGAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
CCTACGAGAAGGACCGCTTCCGCGAGGCCAACGCCGACCTGACCGGCGTCTCGATGGCCGCCGGCAAGCTGCTCGCGTAC
ATGTTCCCCACGGTCATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGCGCGATGCGCGTCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGGGGAGCGCATCCAGGAGGTCCTGGACACCGACTCCAGCGTGGTCCCG
CCCAAGGACCCGGTGCGCGAACTCGCCCGCCGCGGCCGCCTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCGCCGGTCCTGCGCGGCGTGGACCTGGTGGCCCGCCCCGGCGAGACCACGGCGGTGATCGGCTCCACCGGAAGCGGCA
AGTCCACCCTGCTGGGCCTGGTCCCGCGGCTCTTCGACGCGACCGGCGGCGAGGTCCTCGTCGACGGGGAGGACGTCCGC
GCGCTCGACCCGGACCTGCTGGCCAGGACGGTCGGCATGGTCCCGCAGAAGCCGTACCTGTTCTCCGGGACCGTCGCGTC
CAATCTGCGCTACGGGCGCCCGGACGCGAGCGACGAGGAACTGTGGCGGGCGCTGGAGGTGGCCCAGGCGAAGGAATTCG
TCTCCGCGCTGGAGGGTGGCCTGCAGGCCCCGGTCAGCCAGGGCGGCACCAACGTCTCCGGCGGCCAGCGCCAGCGTCTG
GCCATCGCCCGCACGCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCCGCGAGACCGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GGGACGCCGACCGGATCATCGTCCTGGACGAGGGTCAGGTCGTGGGTGAGGGACGCCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.45

93.241

0.386