Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H8S51_RS11330 Genome accession   NZ_CP092473
Coordinates   2382348..2384201 (-) Length   617 a.a.
NCBI ID   WP_186900438.1    Uniprot ID   -
Organism   Roseburia rectibacter strain NSJ-69     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2377348..2389201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S51_RS11305 (H8S51_011305) rluF 2377477..2378232 (-) 756 WP_186900435.1 23S rRNA pseudouridine(2604) synthase RluF -
  H8S51_RS11310 (H8S51_011310) - 2378348..2379715 (-) 1368 WP_241070689.1 SH3 domain-containing protein -
  H8S51_RS11320 (H8S51_011320) - 2380048..2381160 (-) 1113 WP_186900437.1 DUF4422 domain-containing protein -
  H8S51_RS11325 (H8S51_011325) - 2381227..2382192 (-) 966 WP_117919008.1 L-lactate dehydrogenase -
  H8S51_RS11330 (H8S51_011330) rcrQ 2382348..2384201 (-) 1854 WP_186900438.1 ABC transporter ATP-binding protein Regulator
  H8S51_RS11335 (H8S51_011335) - 2384194..2386515 (-) 2322 WP_186900439.1 ABC transporter ATP-binding protein -
  H8S51_RS11340 (H8S51_011340) - 2386519..2387013 (-) 495 WP_117919014.1 MarR family winged helix-turn-helix transcriptional regulator -
  H8S51_RS11345 (H8S51_011345) aroD 2387138..2387890 (-) 753 WP_186900440.1 type I 3-dehydroquinate dehydratase -
  H8S51_RS11350 (H8S51_011350) - 2388062..2389093 (+) 1032 WP_186900441.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 68360.81 Da        Isoelectric Point: 6.5146

>NTDB_id=657870 H8S51_RS11330 WP_186900438.1 2382348..2384201(-) (rcrQ) [Roseburia rectibacter strain NSJ-69]
MSNERERTGMQRRGRGPMGHGMQPGEKPKDLKGSLGKLLSYIGSFKAAIIVVMIFAAASTVFNVIGPKILGKATTALSEG
LMAKIQGTGGIDFTYIGQILLFVLGLYVCSAAFNFIQGWIMTGVTQKICYRMRKEISEKINRMPMKYFESRTYGEVLSRI
TNDVDTLGQGLNQSITTIITSVATLIGVLIMMLSISPLMTLIAIVILPISMALISFVVKNSQKYFKDQQEYLGHINGQVE
EVYGGHLVIKAFNREKDTIDEFNRTNEILYQSAWKSQFLSGMMQPIMMFVGNLGYAAVALSGGLFAIRGTITIGDIQAFI
QYVKNFTQPIQQIAQVINQVQSMAAASERVFDFLNEEEEDQTAENPADVSTVTGTVDFDHVQFGYNPDQTIIKDFSAHVK
PGQKIAIVGPTGAGKTTMVKLLMRFYDVNSGSIKLDGHDVREFNRRELRDAFGMVLQDTWLFKGTIMENIRYGRLDATDE
EVIAAAKAAHADHFIKTLPGGYQMELNEDASNVSQGQKQLLTIARAILADNKILILDEATSSVDTRTEVTIQKAMDNLMR
GRTSFVIAHRLSTIRNADLILVMKDGDIVEQGNHEELLAKNGFYANLYNSQFEDVVA

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=657870 H8S51_RS11330 WP_186900438.1 2382348..2384201(-) (rcrQ) [Roseburia rectibacter strain NSJ-69]
ATGAGTAATGAAAGAGAAAGAACAGGAATGCAGCGCCGTGGCAGAGGACCGATGGGACATGGCATGCAGCCGGGAGAAAA
ACCAAAAGATTTAAAAGGTTCTTTAGGAAAACTGTTATCTTATATTGGAAGTTTTAAAGCAGCGATTATTGTGGTCATGA
TTTTTGCGGCAGCTTCTACGGTATTTAATGTAATCGGCCCTAAAATTCTAGGAAAAGCAACAACAGCGCTTTCTGAAGGA
CTGATGGCAAAGATTCAGGGCACTGGAGGCATTGATTTTACTTATATCGGACAGATTCTTTTGTTTGTGCTTGGACTTTA
TGTGTGTAGTGCAGCTTTTAACTTTATCCAGGGCTGGATCATGACAGGTGTGACACAGAAGATCTGTTACCGGATGCGTA
AAGAAATCTCTGAAAAGATCAACCGCATGCCGATGAAATATTTTGAGAGCCGTACTTATGGAGAGGTTTTATCAAGGATC
ACCAATGATGTCGATACTTTAGGTCAGGGATTAAACCAGAGTATCACAACGATCATTACATCGGTTGCTACTTTGATCGG
TGTACTGATCATGATGCTCAGTATTTCTCCGCTGATGACACTGATCGCGATCGTGATCCTGCCAATCTCCATGGCACTGA
TCTCATTTGTGGTTAAGAATTCCCAGAAATACTTCAAAGACCAGCAGGAATATTTAGGCCACATCAACGGACAGGTCGAG
GAAGTTTATGGCGGACATTTAGTTATCAAAGCATTTAACCGTGAAAAAGATACGATCGATGAATTTAACCGTACAAATGA
AATTCTGTATCAGTCAGCATGGAAATCCCAGTTTTTGTCCGGAATGATGCAGCCGATCATGATGTTTGTCGGAAACCTTG
GCTATGCAGCCGTGGCATTATCCGGTGGACTGTTTGCGATCCGTGGAACGATCACAATCGGTGATATCCAGGCATTTATC
CAGTATGTAAAAAACTTTACGCAGCCGATCCAGCAGATAGCACAGGTCATCAACCAGGTGCAGTCGATGGCGGCAGCATC
CGAGCGTGTGTTTGATTTTTTAAATGAGGAAGAGGAAGATCAGACTGCAGAAAATCCGGCAGATGTGAGTACAGTGACAG
GAACGGTTGATTTTGATCATGTACAGTTTGGCTATAATCCGGATCAGACGATCATCAAAGATTTCAGTGCTCATGTAAAA
CCGGGACAGAAGATCGCTATTGTAGGTCCGACCGGAGCAGGAAAGACCACGATGGTAAAACTTTTAATGCGTTTTTATGA
TGTAAACAGCGGTTCTATCAAATTAGACGGTCATGATGTAAGAGAGTTTAACCGCAGGGAATTAAGGGATGCGTTTGGAA
TGGTATTGCAGGATACATGGCTGTTTAAAGGAACGATCATGGAAAATATCCGTTACGGTCGTTTAGATGCCACGGATGAG
GAAGTGATCGCGGCAGCGAAAGCAGCACATGCCGATCACTTTATCAAGACGCTTCCGGGTGGTTATCAGATGGAATTAAA
TGAGGATGCAAGCAATGTTTCACAGGGACAGAAACAGCTCCTTACGATCGCAAGGGCAATTCTTGCAGATAATAAGATTT
TGATCCTCGATGAGGCAACTTCTTCGGTTGATACGAGAACTGAGGTTACGATCCAGAAGGCAATGGATAACCTGATGCGT
GGCAGAACCAGTTTTGTCATTGCACACAGATTATCAACGATCCGTAATGCAGATCTGATCCTTGTCATGAAGGATGGGGA
TATCGTGGAACAGGGAAATCATGAAGAACTGCTTGCGAAAAACGGATTTTATGCAAATCTTTATAATTCACAGTTTGAGG
ATGTTGTTGCCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-541)

ABC transporter transmembrane region (ABC_membrane)

(49-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.536

94.976

0.489