Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHA65_RS13175 Genome accession   NZ_CP108271
Coordinates   2799239..2801161 (+) Length   640 a.a.
NCBI ID   WP_327283316.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00045     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2794239..2806161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA65_RS13160 (OHA65_13090) - 2795508..2795810 (+) 303 WP_405761906.1 YtxH domain-containing protein -
  OHA65_RS13165 (OHA65_13095) - 2795884..2797338 (+) 1455 WP_405761908.1 FGGY family carbohydrate kinase -
  OHA65_RS13170 (OHA65_13100) rcrP 2797509..2799242 (+) 1734 WP_327283315.1 ABC transporter ATP-binding protein Regulator
  OHA65_RS13175 (OHA65_13105) rcrQ 2799239..2801161 (+) 1923 WP_327283316.1 ABC transporter ATP-binding protein Regulator
  OHA65_RS13180 (OHA65_13110) rpoS 2801212..2802357 (-) 1146 WP_327283317.1 RNA polymerase sigma factor Regulator
  OHA65_RS13185 (OHA65_13115) - 2802562..2804643 (-) 2082 WP_327283318.1 molybdopterin oxidoreductase family protein -
  OHA65_RS13190 (OHA65_13120) - 2804690..2804842 (-) 153 WP_405755972.1 hypothetical protein -
  OHA65_RS13195 - 2804969..2805213 (-) 245 Protein_2614 SDR family NAD(P)-dependent oxidoreductase -
  OHA65_RS13200 (OHA65_13125) - 2805246..2805923 (-) 678 WP_327283320.1 ElyC/SanA/YdcF family protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68934.41 Da        Isoelectric Point: 5.5346

>NTDB_id=657861 OHA65_RS13175 WP_327283316.1 2799239..2801161(+) (rcrQ) [Streptomyces sp. NBC_00045]
MSGPGGRMMMGPAERSLDFKGSGKRLLSQIAHDRVKLWGMVAAAVGSVACSVVGPKILGQATDLVFAGIVGRQMPAGITK
QQSLDGLRAKGQGGMADMLSGTDFTPGEGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHIMNGTVYRMREELQAKLS
RLPLSYFDRHKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMFWISPLLALVALVTIPVSVFVAAKIGKKS
QPQFVAQWKSTGALNAHIEEMYSGHTLVKVFGRQKESAAIFAEHNEALYRASFKAQLVSGIMQPVMFFISNINYVLVAVV
GGLRVASGNLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAQEQEPDAEVPERPEQVRGQVTLDKV
AFRYEPDKPLIENLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRGSIGMVLQDTWL
FGGTIAENIAYGAAREVTRAEIEEAARAAHADRFVRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEELLEAEGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=657861 OHA65_RS13175 WP_327283316.1 2799239..2801161(+) (rcrQ) [Streptomyces sp. NBC_00045]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCGAGCGGTCCCTGGATTTCAAGGGCTCGGGCAAACGGCTGCT
GAGCCAGATCGCGCACGACCGGGTCAAGCTGTGGGGCATGGTCGCCGCCGCCGTCGGCAGCGTCGCCTGTTCGGTCGTCG
GCCCGAAGATCCTGGGCCAGGCCACCGACCTGGTGTTCGCGGGGATCGTCGGCCGTCAGATGCCGGCCGGGATCACCAAG
CAGCAGTCGCTGGACGGACTGCGCGCCAAGGGCCAGGGCGGGATGGCGGACATGCTGTCCGGCACCGACTTCACCCCCGG
CGAGGGCATCGACTTCGGTGCCGTCGGCGTCGTGGCGATCTGGGCGCTGGTGGTGTTCACCCTCGCCGGCCTGTTGATGC
TGGTCGCGACGCGGCTGTCGAACCACATCATGAACGGCACCGTGTACCGGATGCGCGAGGAGCTCCAGGCCAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCGGCACAAGCGCGGCGAAGTGCTCAGCCGGGCCACCAACGACATCGACAACATCGG
GCAGACGCTCCAGCAGACGATGGGCCAACTGCTCAACTCGCTGCTGACGATCGTCGGCGTGCTGGCGATGATGTTCTGGA
TCTCCCCGCTGCTGGCGCTGGTCGCGCTGGTGACGATCCCGGTGTCGGTCTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGTCGACGGGCGCGCTCAACGCGCACATCGAGGAGATGTACTCGGGCCACACGCT
GGTCAAGGTCTTCGGCCGTCAGAAGGAGTCCGCGGCCATCTTCGCCGAGCACAACGAGGCGCTGTACCGGGCCTCGTTCA
AGGCGCAGCTGGTCAGCGGGATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGGTGGCGGTCGTC
GGCGGTCTGCGGGTGGCCTCGGGCAACCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTCGAT
GCCGCTGACGCAGGTCGCGTCGATGGCGAACCTCGTACAGTCCGGTGTCGCCTCGGCGGAGCGGGTGTACGAGCTGCTCG
ACGCGCAGGAGCAGGAGCCGGACGCGGAGGTCCCGGAGCGGCCGGAGCAGGTCCGCGGCCAGGTCACGCTCGACAAGGTG
GCCTTCCGCTACGAGCCGGACAAGCCGCTCATCGAGAACCTGTCGCTGACCGTCGAGCCCGGCCACACGGTCGCGATCGT
CGGCCCGACCGGCGCGGGCAAGACCACCCTCGTCAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGCGAGATCGCCC
TCGACGGGGTGGACATCGCCAAGATGACCCGCGAGGAACTGCGCGGCAGCATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGGACCATCGCGGAGAACATCGCCTACGGTGCGGCCCGCGAGGTCACCCGCGCCGAGATCGAGGAGGCGGCGCG
GGCCGCCCACGCGGACCGGTTCGTCCGCACCCTGCCCGACGGCTACGACACCGTGCTGGACGACGAGGGCGCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATTGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCAACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTCGCGCACGGCCGTACGTCCTTCGTGAT
CGCGCACCGGCTGTCCACGATCCGCGATGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTGGAGCAGGGCACCC
ACGAGGAGCTGCTGGAGGCGGAGGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(56-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.129

96.563

0.387