Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MJ646_RS00495 Genome accession   NZ_CP092470
Coordinates   128450..130282 (+) Length   610 a.a.
NCBI ID   WP_277715062.1    Uniprot ID   -
Organism   Bifidobacterium pseudocatenulatum strain Bi-OTA128     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 123450..135282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ646_RS00475 (MJ646_00470) thiS 123789..123983 (-) 195 WP_338157269.1 sulfur carrier protein ThiS -
  MJ646_RS00480 (MJ646_00475) - 124540..125505 (+) 966 WP_117750361.1 aldo/keto reductase -
  MJ646_RS00485 (MJ646_00480) - 125624..126118 (+) 495 WP_022244787.1 MarR family winged helix-turn-helix transcriptional regulator -
  MJ646_RS00490 (MJ646_00485) - 126424..128286 (+) 1863 Protein_93 ABC transporter ATP-binding protein -
  MJ646_RS00495 (MJ646_00490) rcrQ 128450..130282 (+) 1833 WP_277715062.1 ABC transporter ATP-binding protein Regulator
  MJ646_RS00500 (MJ646_00495) - 130368..131336 (-) 969 WP_277715063.1 FAD:protein FMN transferase -
  MJ646_RS00505 (MJ646_00500) - 131443..132849 (+) 1407 WP_420921395.1 MFS transporter -
  MJ646_RS00510 (MJ646_00505) - 133243..135006 (+) 1764 WP_277715064.1 FTR1 family iron permease -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 66587.13 Da        Isoelectric Point: 6.0599

>NTDB_id=657852 MJ646_RS00495 WP_277715062.1 128450..130282(+) (rcrQ) [Bifidobacterium pseudocatenulatum strain Bi-OTA128]
MPGGPMGRGRGAVEKPQNFGGVMKKLVHFCRHYIPAIIVALVLGAIGTVCQIVGPDKLKDMTNEIAKGLPALVNGKPVLG
AIDMDAVTHIAWLLVALYAGYAVLCYVQSWMMANVTQRTAQELREAISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQ
TLGQSVGSLITSVTLFVGALIMMFYNNVIMTVCAIVSSLVGLLIMGAIMKVSQKYFSRQQIALGDVNGHVEEMYAGHTVV
KAYCGEADSIRAFEKYNGDLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQP
LSQFAQAFQNLQRCAAASERVFSFLEEPEMADESDKQALLGVNGKPVRGDVEFSHVKFGYDPSKTIINDFSASVKSGQKV
AIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFHGTVRENIAYSKPGVTDKQIEDA
CKAVGLHHYIMSLPNGYDTVLDDKATLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFV
IAHRLSTIRDADMILVMNHGDIVESGTHEELLAKGGFYADIYNSQFALTD

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=657852 MJ646_RS00495 WP_277715062.1 128450..130282(+) (rcrQ) [Bifidobacterium pseudocatenulatum strain Bi-OTA128]
ATGCCAGGAGGACCTATGGGACGCGGCCGCGGAGCCGTTGAAAAACCGCAGAATTTCGGTGGTGTGATGAAGAAACTGGT
GCATTTCTGCCGCCACTACATTCCCGCCATCATTGTGGCGCTCGTATTGGGCGCGATCGGCACGGTATGCCAGATCGTCG
GTCCGGACAAGCTCAAGGACATGACCAACGAGATCGCCAAAGGCCTGCCCGCGCTAGTCAACGGCAAGCCGGTGCTCGGT
GCGATCGACATGGACGCGGTCACGCACATCGCATGGCTGCTGGTGGCGCTGTATGCGGGGTACGCGGTGCTGTGCTACGT
GCAAAGCTGGATGATGGCGAACGTCACGCAGCGCACCGCACAGGAGCTGCGCGAAGCCATCAGCGTGAAGATCAACAAGC
TGCCGCTCAAGTATTTCGACAAGGTCAGCTACGGCGATGTGCTCAGCCGCATCACCAACGATGTGGACGCCATCGGCCAG
ACGCTCGGCCAGTCGGTCGGCTCGCTGATCACGTCGGTCACGCTGTTCGTGGGCGCGCTCATCATGATGTTCTACAACAA
TGTGATTATGACGGTGTGCGCCATCGTTTCCAGCCTGGTTGGCCTGCTCATCATGGGCGCAATCATGAAGGTTTCGCAGA
AGTACTTCTCCCGTCAGCAGATCGCATTGGGCGATGTCAACGGTCACGTCGAAGAGATGTACGCCGGCCACACCGTGGTC
AAGGCGTATTGCGGCGAGGCTGATTCGATTCGCGCGTTCGAAAAGTACAACGGCGATTTGTACGATTCGGGATGGAAGAG
CCAGTTCCTTTCCGGCCTGATGATGCCGTTGATGAATTTCGTCGGCAATTTCGGCTACGTGGTTGTGTGCGTGGTTGGCG
CTGTGCTTGCGATGGATGGCAAGATCGAGTTTGGTGTGATCGTTGCGTTCATGATGTACATTCGACTGTTCACCCAGCCG
CTTTCCCAGTTCGCGCAGGCATTCCAGAACCTGCAGCGTTGCGCGGCCGCTTCCGAGCGCGTGTTCAGCTTCCTTGAAGA
GCCGGAGATGGCCGACGAATCCGACAAGCAGGCGCTGCTCGGCGTGAACGGCAAACCGGTGCGCGGTGACGTTGAGTTCA
GTCATGTGAAGTTCGGTTACGATCCGAGCAAGACGATCATCAACGATTTCTCCGCTTCGGTGAAGTCCGGTCAGAAGGTT
GCGATTGTTGGTCCGACCGGTGCCGGCAAGACCACGATGGTGAATCTGCTGATGCGTTTCTATGAGATTTCGGGCGGTTC
GATTGCGATTGATGGTGTGGATACGAAGTCCGTGCCACGCTGGAACGTGCATGACCAGTTCTCCATGGTATTGCAGGATA
CGTGGGTGTTCCATGGAACAGTGCGTGAAAACATTGCGTATTCGAAGCCGGGCGTCACCGACAAGCAGATCGAGGACGCA
TGCAAGGCCGTGGGTCTGCATCACTACATCATGTCGCTGCCGAATGGCTATGACACAGTGCTTGACGACAAGGCCACGCT
TTCGCAGGGTCAGAAGCAGTTGCTCACCATTGCGCGAGCCATGGTTGAGGATGCGCCGATTCTGATTCTCGACGAGGCCA
CCTCTTCGGTCGATACGCGTACGGAAGAGCTGATTCAGAAGGCCATGGACGCGCTGACCGTGGACCGTACGTCGTTCGTG
ATCGCGCATCGCCTGTCCACCATCCGCGATGCGGACATGATTTTGGTCATGAACCATGGCGACATCGTGGAAAGCGGTAC
GCATGAGGAGCTGCTCGCCAAAGGCGGTTTCTACGCCGACATTTACAACAGCCAGTTCGCCCTCACCGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(388-535)

ABC transporter transmembrane region (ABC_membrane)

(38-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.333

95.902

0.511