Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG859_RS25805 Genome accession   NZ_CP108266
Coordinates   5666374..5668107 (-) Length   577 a.a.
NCBI ID   WP_328925615.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00048     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5661374..5673107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG859_RS25795 (OG859_25660) rpoS 5663216..5664346 (+) 1131 WP_328925617.1 RNA polymerase sigma factor Regulator
  OG859_RS25800 (OG859_25665) rcrQ 5664455..5666377 (-) 1923 WP_405679985.1 ABC transporter ATP-binding protein Regulator
  OG859_RS25805 (OG859_25670) rcrP 5666374..5668107 (-) 1734 WP_328925615.1 ABC transporter ATP-binding protein Regulator
  OG859_RS25810 (OG859_25675) - 5668305..5669753 (-) 1449 WP_328925614.1 FGGY family carbohydrate kinase -
  OG859_RS25815 (OG859_25680) - 5669803..5670102 (-) 300 WP_405679986.1 YtxH domain-containing protein -
  OG859_RS25835 (OG859_25700) - 5670740..5671897 (-) 1158 WP_328925538.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62551.66 Da        Isoelectric Point: 5.1673

>NTDB_id=657744 OG859_RS25805 WP_328925615.1 5666374..5668107(-) (rcrP) [Streptomyces sp. NBC_00048]
MLIRLLRTHLGQYQKPIALLVLLQLLQTSATLYLPTLNADIIDTGVVNGDTGYILRFGALMLGVSLVQLVCNVGAVYYGA
RTAAAFGRDVRAAVFDRVQSFSARELGQFGAPSLITRSTNDVQQIQMLVLMTFTLMVSAPIMCVGGIVMALSLDVKLSGV
LLAVVPVLGLSVGAIVLKTRPLFRLMQARLDTVNRVLREQITGNRVIRAFVRDTYEKDRFREANEDLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVIWFGAMRVDSNGMEIGQLTAFLAYLLQIVMAVMMATFMFMMVPRAEVCAERVQEVLDTRSSVVP
PADPVRELARRGLLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGDVLVDGEDVR
RLEPELLARTVGMVPQKPYLFSGTVASNLRYGRPDASDEELWRALEVAQAKDFVSELEGGLEAPIAQGGTNVSGGQRQRL
AIARALVQRPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=657744 OG859_RS25805 WP_328925615.1 5666374..5668107(-) (rcrP) [Streptomyces sp. NBC_00048]
GTGCTCATACGACTTCTGCGGACCCATCTGGGTCAGTACCAAAAACCCATCGCCCTGCTGGTCCTGCTGCAGCTGCTGCA
GACCAGCGCGACCCTCTATCTGCCCACCCTCAACGCGGACATCATCGACACCGGTGTCGTCAACGGCGACACCGGCTACA
TCCTGCGCTTCGGTGCGCTGATGCTCGGTGTCTCCCTCGTCCAGCTCGTCTGCAACGTCGGCGCCGTCTACTACGGAGCC
CGCACGGCGGCGGCCTTCGGGCGGGACGTGCGCGCCGCCGTCTTCGACCGTGTCCAGAGCTTCTCCGCGCGGGAGCTCGG
CCAGTTCGGGGCCCCGTCCCTGATCACCCGTTCGACGAACGACGTCCAGCAGATCCAGATGCTGGTCCTGATGACCTTCA
CCCTGATGGTCTCGGCGCCGATCATGTGCGTGGGCGGGATCGTCATGGCGCTGTCGCTCGACGTGAAGCTGTCGGGCGTC
CTGCTCGCCGTCGTTCCCGTGCTCGGTCTGTCGGTCGGCGCCATCGTCCTCAAGACGCGGCCGCTGTTCCGCCTGATGCA
GGCCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACA
CGTACGAGAAGGATCGTTTCCGGGAGGCCAACGAGGACCTCACCGGGGTCTCGCTGGCCGCCGGCAAGCTCCTCGCCCTG
ATGTTCCCCACGGTCATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGCGCGATGCGCGTCGACAGCAA
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGCTGCAGATCGTCATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCGTCCAGGAGGTCCTGGACACCCGTTCCAGCGTGGTCCCG
CCGGCCGACCCGGTCCGCGAGCTCGCCCGGCGCGGGCTCCTCGAACTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCCCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGCCCCGGCGAGACCACCGCGGTGATCGGCTCCACCGGAAGCGGCA
AGTCCACCCTGCTGGGCCTGGTCCCGCGGCTGTTCGACGCGACCGGCGGCGATGTGCTGGTCGACGGCGAGGACGTACGC
CGGCTCGAACCGGAACTGCTCGCCAGGACGGTCGGCATGGTCCCGCAGAAGCCGTACCTCTTCTCCGGAACCGTCGCCTC
CAACCTGCGTTACGGCCGCCCGGACGCGAGCGACGAAGAGCTGTGGCGGGCCTTGGAGGTGGCCCAGGCGAAGGACTTCG
TGTCCGAGCTGGAGGGTGGCCTGGAGGCTCCCATCGCCCAGGGCGGAACCAATGTCTCCGGCGGCCAGCGCCAGCGTCTG
GCCATCGCCCGCGCCCTGGTGCAGCGCCCGGAGATCTATCTGTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCACTCGCCCGCGAGACCGAGGACGCGACCGTGGTGATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCATCGTCCTGGACGAGGGCCAGGTGGTGGGCGAGGGGCGCCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.892

93.241

0.381