Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   MJX77_RS16010 Genome accession   NZ_CP092454
Coordinates   3371286..3372101 (-) Length   271 a.a.
NCBI ID   WP_252059630.1    Uniprot ID   -
Organism   Acinetobacter sp. AHP123     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3366286..3377101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJX77_RS15980 - 3366587..3367027 (-) 441 WP_005304736.1 SRPBCC family protein -
  MJX77_RS15985 tadA 3367096..3367608 (-) 513 WP_252059628.1 tRNA adenosine(34) deaminase TadA -
  MJX77_RS15990 - 3367614..3368738 (-) 1125 WP_111853773.1 enoyl-CoA hydratase/isomerase family protein -
  MJX77_RS15995 ung 3368735..3369448 (-) 714 WP_005304723.1 uracil-DNA glycosylase -
  MJX77_RS16000 - 3369502..3370098 (-) 597 WP_004792725.1 6-carboxytetrahydropterin synthase -
  MJX77_RS16005 gspK 3370327..3371286 (-) 960 WP_252059629.1 type II secretion system minor pseudopilin GspK -
  MJX77_RS16010 xcpW 3371286..3372101 (-) 816 WP_252059630.1 type II secretion system minor pseudopilin GspJ Machinery gene
  MJX77_RS16015 xcpV 3372101..3372481 (-) 381 WP_252059631.1 type II secretion system minor pseudopilin GspI Machinery gene
  MJX77_RS16020 - 3372471..3373025 (-) 555 WP_005304714.1 type II secretion system protein -
  MJX77_RS16025 - 3373035..3373643 (-) 609 WP_013198082.1 TetR/AcrR family transcriptional regulator -
  MJX77_RS16030 - 3373680..3374453 (-) 774 WP_004792737.1 TatD family hydrolase -
  MJX77_RS16035 - 3374471..3374812 (-) 342 WP_003651467.1 PilZ domain-containing protein -
  MJX77_RS16040 - 3374823..3375803 (-) 981 WP_252059632.1 DNA polymerase III subunit delta' -
  MJX77_RS16045 kdsB 3375817..3376578 (-) 762 WP_049836518.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 30775.11 Da        Isoelectric Point: 9.8268

>NTDB_id=657736 MJX77_RS16010 WP_252059630.1 3371286..3372101(-) (xcpW) [Acinetobacter sp. AHP123]
MIKNNYLRSRSPVSHLAARSEQMMRGYSEQSSSSCAQTKLGFKDSHTRNTVSHLTARSSSARLTRASGFTLVELLVAIAI
FAVLSLLGWKIFDYLLKVRDRNAQHEVQLFELQDAYQQILRDTLQIIPLSANQGGQLRPALELDNQVLHFSKAGVTDPLK
QGLSPFERIEYRYDPDQKKLYRLKYSNLNTSNREQPLSSTLLSQVEQFQIMVLTPQEVTKWPEINIDPTKPEEFRKLPKG
IKIQLTVAGISYEWIYSLNQGDSSLSNKGVG

Nucleotide


Download         Length: 816 bp        

>NTDB_id=657736 MJX77_RS16010 WP_252059630.1 3371286..3372101(-) (xcpW) [Acinetobacter sp. AHP123]
ATGATAAAAAATAATTATCTTCGCTCGAGAAGTCCAGTTTCTCATCTTGCTGCACGATCGGAGCAGATGATGAGGGGTTA
CTCTGAGCAAAGCTCTTCGTCTTGCGCTCAGACAAAGCTTGGCTTTAAAGACTCTCACACTCGAAACACAGTTTCTCATC
TTACGGCACGATCGAGCAGTGCTCGATTAACTCGTGCCTCAGGATTTACTTTAGTTGAGCTTTTAGTCGCAATTGCAATT
TTTGCTGTTCTATCTTTGTTGGGTTGGAAGATTTTTGATTATTTATTAAAAGTCCGTGATCGTAATGCACAACACGAAGT
ACAGTTATTCGAATTACAAGATGCTTATCAGCAAATTTTACGTGATACGTTGCAAATTATACCTTTATCGGCTAATCAAG
GCGGGCAACTACGTCCAGCCTTAGAACTTGATAATCAAGTTCTTCACTTTAGTAAGGCTGGTGTTACGGATCCCTTAAAA
CAAGGGTTGTCACCTTTTGAGCGTATCGAATATCGATATGATCCTGATCAAAAAAAGCTTTATCGTCTTAAATATAGTAA
TTTAAATACTTCAAACAGAGAGCAACCATTATCAAGTACGCTGTTGAGCCAAGTTGAACAATTTCAAATTATGGTGCTAA
CGCCTCAAGAAGTGACAAAGTGGCCAGAAATTAATATTGATCCCACAAAACCTGAAGAATTTAGAAAGTTGCCGAAAGGA
ATAAAAATACAACTCACAGTTGCTGGTATAAGTTATGAGTGGATTTATAGCTTAAATCAAGGTGATTCATCGCTCTCCAA
TAAAGGAGTGGGATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(65-87)

Type II secretion system (T2SS), protein J (T2SSJ)

(121-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

88.839

82.657

0.734