Detailed information NTG0657536

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MI302_RS11090
• Genome accession: NZ_CP092445
• Coordinates: 1948319..1949383 (+)
• Length: 354 a.a.
• NCBI ID: WP_239725817.1
• Uniprot ID: -
• Organism: Thermus sp. NEB1569
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1943319..1954383

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MI302_RS11065 (MI302_11065)	-	1943689..1944015 (+)	327	WP_026328946.1	nucleotide pyrophosphohydrolase	-
MI302_RS11070 (MI302_11070)	-	1944017..1944922 (+)	906	WP_239725813.1	ABC transporter ATP-binding protein	-
MI302_RS11075 (MI302_11075)	-	1944915..1945667 (+)	753	WP_239725814.1	ABC transporter permease	-
MI302_RS11080 (MI302_11080)	-	1945657..1946733 (+)	1077	WP_239725815.1	YbfB/YjiJ family MFS transporter	-
MI302_RS11085 (MI302_11085)	-	1946721..1948256 (-)	1536	WP_239725816.1	carboxypeptidase M32	-
MI302_RS11090 (MI302_11090)	pilD	1948319..1949383 (+)	1065	WP_239725817.1	A24 family peptidase	Machinery gene
MI302_RS11095 (MI302_11095)	-	1949392..1950318 (+)	927	WP_370687347.1	nitroreductase family protein	-
MI302_RS11100 (MI302_11100)	-	1950332..1951210 (-)	879	WP_239725818.1	C40 family peptidase	-
MI302_RS11105 (MI302_11105)	-	1951314..1952432 (+)	1119	WP_239725819.1	integrase core domain-containing protein	-
MI302_RS11115 (MI302_11115)	-	1952563..1953261 (+)	699	WP_239725820.1	FAD-dependent oxidoreductase	-
MI302_RS11120 (MI302_11120)	-	1953154..1954179 (-)	1026	WP_239725821.1	A/G-specific adenine glycosylase	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 38015.38 Da
• Isoelectric Point: 8.9672

>NTDB_id=657536 MI302_RS11090 WP_239725817.1 1948319..1949383(+) (pilD) [Thermus sp. NEB1569]
MWSLFALLLGLVVGSFLNVVIHRIPRKESIAFPPSRCPHCGHPLGPLDLVPILSYLLLKGRCRYCRSPISPRYPLVEALT
GGLFLLASRFYPPGVEALLVFAFLAFLVALSFLDLDTFELPDTLTYGLLFLGLLSAYLLSFPRPFAEALDGALIAAGVLG
LVAGYGGLFLRRFREARAEVPVGPHQVHMAALFGALLGPGVGMALAFLTWALSGRTGKPVVLPDRITLPLLPLAWILAPY
LGADLLSTLKGSFLAAGGLALAGGLYWAFKPQGETEEEPIAMGYGDVKLLGALGAWLGLYSLLALFLGVLFGALVGLAFR
QRKIPFGPYLALGGIVAFFYGEALWRAYLAWLGL

Nucleotide

• Length: 1065 bp

>NTDB_id=657536 MI302_RS11090 WP_239725817.1 1948319..1949383(+) (pilD) [Thermus sp. NEB1569]
ATGTGGTCCCTCTTCGCCCTGCTTTTGGGCCTTGTGGTGGGGTCTTTCTTAAACGTGGTGATCCACCGTATCCCCCGGAA
GGAGTCCATCGCTTTCCCTCCCTCCCGCTGCCCCCACTGCGGCCACCCTTTGGGCCCCCTGGACCTCGTCCCCATCCTCT
CCTACCTCCTCCTTAAGGGGCGGTGCCGCTACTGCCGAAGCCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTGACC
GGGGGGCTTTTTCTCCTGGCCAGCCGCTTTTATCCCCCAGGGGTGGAGGCCCTCCTGGTTTTCGCCTTCCTGGCCTTCTT
GGTGGCCCTCTCCTTCCTTGACCTGGACACCTTTGAGCTTCCCGATACCCTCACCTACGGCCTCCTCTTCCTAGGGCTCC
TTTCCGCCTACCTCCTTTCCTTCCCCCGACCCTTTGCCGAGGCCCTGGACGGGGCCTTGATCGCCGCCGGGGTCCTGGGG
CTGGTGGCAGGGTACGGAGGGCTTTTCCTGAGGCGCTTCCGCGAGGCCAGGGCGGAGGTGCCCGTGGGACCCCACCAGGT
GCACATGGCAGCCCTTTTCGGTGCCCTCCTGGGCCCGGGGGTGGGCATGGCCCTGGCCTTCCTCACCTGGGCCCTTTCGG
GGCGCACGGGAAAACCCGTGGTGCTCCCCGATCGGATCACCCTTCCCCTTCTGCCCTTGGCCTGGATCCTGGCCCCCTAC
CTGGGGGCCGACCTCCTCAGCACCTTGAAAGGGTCCTTCCTGGCGGCAGGGGGATTGGCCCTGGCGGGAGGGCTTTACTG
GGCCTTCAAGCCCCAAGGGGAAACGGAGGAAGAGCCCATAGCCATGGGCTACGGGGACGTGAAGCTCCTTGGGGCCCTTG
GGGCCTGGCTTGGGCTTTATAGCCTTCTCGCCCTTTTCCTGGGGGTGCTCTTCGGGGCCCTGGTTGGCCTGGCCTTCCGG
CAACGGAAAATCCCCTTCGGCCCCTACCTGGCCCTGGGGGGGATTGTGGCTTTCTTCTACGGGGAAGCCTTGTGGCGGGC
CTATCTGGCCTGGCTCGGGCTATAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (222-317)

• Type IV leader peptidase family (Peptidase_A24) (102-200)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (8-87)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	45.596	100	0.497