Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG953_RS29540 Genome accession   NZ_CP108256
Coordinates   6292408..6294141 (-) Length   577 a.a.
NCBI ID   WP_405688085.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00057     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6287408..6299141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG953_RS29530 (OG953_29480) - 6289232..6290326 (+) 1095 WP_405688082.1 RNA polymerase sigma factor -
  OG953_RS29535 (OG953_29485) - 6290477..6292408 (-) 1932 WP_405688083.1 ABC transporter ATP-binding protein -
  OG953_RS29540 (OG953_29490) rcrP 6292408..6294141 (-) 1734 WP_405688085.1 ABC transporter ATP-binding protein Regulator
  OG953_RS29545 (OG953_29495) - 6294311..6295756 (-) 1446 WP_405688086.1 FGGY family carbohydrate kinase -
  OG953_RS29550 (OG953_29500) - 6295826..6296125 (-) 300 WP_405688087.1 YtxH domain-containing protein -
  OG953_RS29570 (OG953_29520) - 6297255..6297464 (+) 210 WP_405688089.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62820.89 Da        Isoelectric Point: 5.2616

>NTDB_id=657416 OG953_RS29540 WP_405688085.1 6292408..6294141(-) (rcrP) [Streptomyces sp. NBC_00057]
MLIKLLRAYLGPYKKPILLLVLLQLLQTCASLYLPTLNADIIDNGVVKGDTGYILEFGGIMIAVSIAQVVCNMGAVYYGA
RTASALGRDVRASIFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQERVDTVNRVLREQITGNRVIRAFVRDRYEEERFRGANNELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PVEPVRELRAHGHLEVRGADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEALEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALSQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
DTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=657416 OG953_RS29540 WP_405688085.1 6292408..6294141(-) (rcrP) [Streptomyces sp. NBC_00057]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGTCCGTACAAGAAACCCATCCTGCTCCTGGTCCTCCTCCAACTCCTGCA
GACCTGCGCCAGCCTCTATCTGCCCACGCTGAACGCCGACATCATCGACAACGGTGTCGTCAAGGGGGACACGGGCTACA
TCCTGGAGTTCGGCGGCATCATGATCGCCGTCAGCATCGCCCAGGTGGTCTGCAACATGGGGGCCGTCTATTACGGCGCC
CGCACCGCGTCCGCCCTCGGCCGTGATGTCCGGGCGTCGATCTTCGACCGGGTGCAGTCGTTCTCGGCGCGTGAGGTCGG
GCGGTTCGGCGCACCCTCGCTGATCACACGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACGTTCA
CCCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTTTCGGCCGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGCCTGATCGTCAAGCGGATGCGGCCGCTGTTCCGCACCATGCA
GGAGCGGGTCGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGTGACC
GTTACGAGGAGGAGCGTTTCCGCGGCGCCAACAACGAGCTGACCGATGTGGCGCTGTCCACGGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAATGTGTCCTCGATCGCCGTGGTCTGGTTCGGTGCCCACCGCATCGACAGCGG
CGGCATGGAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCGAGCGTGGTTCCG
CCGGTCGAGCCGGTCCGCGAGCTGCGCGCCCACGGGCATCTGGAGGTCCGCGGCGCGGACTTCCGCTACCCCGGCGCCGA
GGAGCCGGTGCTGCGGTCGGTGGATCTGGTGGCCCGTCCCGGCGAGACCACCGCGATCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGACTCGTACCGCGGCTGTTCGATGTGACGGACGGCCAGGTACTGGTCGACGGCACGGACGTACGG
ACGCTGGAGCCGGCGCTGCTGGCGAAGACCGTGAGTCTCGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGCGCTGGAACACGGCCTGCACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGACAGCGGCAGCGTCTG
GCGATCGCCAGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACCGA
CGCCGCACTGCGCGGGGCGCTCTCGCAGGAGACGGCCGAGGCCACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGCTCCGGCACCCATCACGAGCTGATGGACGGCAAT
GACACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.309

100

0.407