Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MH925_RS08180 Genome accession   NZ_CP092412
Coordinates   1606930..1607709 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain HNU24     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1601930..1612709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MH925_RS08160 trmFO 1602617..1603924 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MH925_RS08165 xerC 1603994..1604911 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  MH925_RS08170 hslV 1604927..1605472 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  MH925_RS08175 hslU 1605489..1606892 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  MH925_RS08180 codY 1606930..1607709 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MH925_RS08185 flgB 1608063..1608452 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  MH925_RS08190 flgC 1608452..1608904 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  MH925_RS08195 fliE 1608915..1609235 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  MH925_RS08200 fliF 1609278..1610888 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  MH925_RS08205 fliG 1610901..1611917 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  MH925_RS08210 fliH 1611910..1612665 (+) 756 WP_023356896.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=657232 MH925_RS08180 WP_003154263.1 1606930..1607709(+) (codY) [Bacillus velezensis strain HNU24]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=657232 MH925_RS08180 WP_003154263.1 1606930..1607709(+) (codY) [Bacillus velezensis strain HNU24]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471