Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | MID13_RS00675 | Genome accession | NZ_CP092384 |
| Coordinates | 149583..150296 (-) | Length | 237 a.a. |
| NCBI ID | WP_332412443.1 | Uniprot ID | - |
| Organism | Vibrio gigantis strain ACE001 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 144583..155296
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MID13_RS00660 (MID13_00660) | cysQ | 147186..148013 (-) | 828 | WP_086711671.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| MID13_RS00665 (MID13_00665) | nudE | 148048..148599 (-) | 552 | WP_061033119.1 | ADP compounds hydrolase NudE | - |
| MID13_RS00670 (MID13_00670) | nfuA | 148889..149473 (-) | 585 | WP_026084098.1 | Fe-S biogenesis protein NfuA | - |
| MID13_RS00675 (MID13_00675) | comF | 149583..150296 (-) | 714 | WP_332412443.1 | ComF family protein | Machinery gene |
| MID13_RS00680 (MID13_00680) | bioH | 150390..151166 (+) | 777 | WP_239717045.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| MID13_RS00685 (MID13_00685) | - | 151343..151816 (+) | 474 | WP_239717047.1 | ATP-dependent Lon protease | - |
| MID13_RS00690 (MID13_00690) | - | 151958..154288 (-) | 2331 | WP_239717048.1 | Tex family protein | - |
Sequence
Protein
Download Length: 237 a.a. Molecular weight: 27094.36 Da Isoelectric Point: 9.3000
>NTDB_id=657072 MID13_RS00675 WP_332412443.1 149583..150296(-) (comF) [Vibrio gigantis strain ACE001]
MLSDWLQKHTLRLVTPQCHLCKLDKRSDDHHPRWCNSCLKLFKLVPRCQRCGLKTVTAVEQCGECLGEPPPWHRLYCVGD
YTFPTAGYIQQMKYADKFWFARDLSTLLASRIEEPASLITSVPLHWRRYFHRGFNQSQLLARYTAQELKIGHAVLFKRIR
STASQQGLAKSARKSNLKGAFAMRNANFSANDYSHVAVIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG
MLSDWLQKHTLRLVTPQCHLCKLDKRSDDHHPRWCNSCLKLFKLVPRCQRCGLKTVTAVEQCGECLGEPPPWHRLYCVGD
YTFPTAGYIQQMKYADKFWFARDLSTLLASRIEEPASLITSVPLHWRRYFHRGFNQSQLLARYTAQELKIGHAVLFKRIR
STASQQGLAKSARKSNLKGAFAMRNANFSANDYSHVAVIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG
Nucleotide
Download Length: 714 bp
>NTDB_id=657072 MID13_RS00675 WP_332412443.1 149583..150296(-) (comF) [Vibrio gigantis strain ACE001]
ATGTTATCCGATTGGCTACAAAAACACACACTACGTCTGGTCACACCTCAATGCCACCTGTGTAAGCTAGATAAACGGTC
TGATGATCACCACCCTCGATGGTGTAATAGTTGCCTAAAGTTGTTCAAGCTTGTGCCTCGCTGTCAAAGGTGCGGATTGA
AAACGGTCACAGCCGTCGAACAATGCGGTGAGTGCTTAGGTGAGCCGCCACCTTGGCATCGGCTCTATTGTGTCGGTGAT
TACACCTTTCCAACCGCAGGCTATATTCAACAGATGAAGTATGCCGATAAATTCTGGTTTGCCCGGGATTTGTCGACCTT
GCTCGCGTCACGTATCGAAGAGCCGGCATCTCTCATCACCAGTGTTCCCTTGCATTGGCGTCGATACTTTCATCGCGGTT
TTAATCAGAGTCAGTTGTTGGCGCGTTACACCGCTCAAGAACTCAAAATAGGCCATGCCGTTTTATTCAAGCGCATCCGC
TCAACCGCTTCGCAACAAGGGCTAGCTAAATCAGCAAGAAAAAGTAATTTGAAAGGGGCATTCGCGATGAGAAACGCCAA
CTTTTCAGCGAACGATTACTCGCATGTAGCGGTAATTGATGATGTTGTAACCACAGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTAGGGGTAAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAACCCTCTGGATAA
ATGTTATCCGATTGGCTACAAAAACACACACTACGTCTGGTCACACCTCAATGCCACCTGTGTAAGCTAGATAAACGGTC
TGATGATCACCACCCTCGATGGTGTAATAGTTGCCTAAAGTTGTTCAAGCTTGTGCCTCGCTGTCAAAGGTGCGGATTGA
AAACGGTCACAGCCGTCGAACAATGCGGTGAGTGCTTAGGTGAGCCGCCACCTTGGCATCGGCTCTATTGTGTCGGTGAT
TACACCTTTCCAACCGCAGGCTATATTCAACAGATGAAGTATGCCGATAAATTCTGGTTTGCCCGGGATTTGTCGACCTT
GCTCGCGTCACGTATCGAAGAGCCGGCATCTCTCATCACCAGTGTTCCCTTGCATTGGCGTCGATACTTTCATCGCGGTT
TTAATCAGAGTCAGTTGTTGGCGCGTTACACCGCTCAAGAACTCAAAATAGGCCATGCCGTTTTATTCAAGCGCATCCGC
TCAACCGCTTCGCAACAAGGGCTAGCTAAATCAGCAAGAAAAAGTAATTTGAAAGGGGCATTCGCGATGAGAAACGCCAA
CTTTTCAGCGAACGATTACTCGCATGTAGCGGTAATTGATGATGTTGTAACCACAGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTAGGGGTAAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAACCCTCTGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Vibrio cholerae strain A1552 |
54.43 |
100 |
0.544 |
| comF | Vibrio campbellii strain DS40M4 |
49.794 |
100 |
0.511 |